/
AllGenerics.R
126 lines (115 loc) · 2.95 KB
/
AllGenerics.R
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#' @export
#' @name imbalance_score
#' @title Imbalance Score
#' @import methods
#' @param ... parameters including:
methods::setGeneric(
name = "imbalance_score",
signature = "Object",
def = function(Object, ...) {
standardGeneric("imbalance_score")
}
)
#' @export
#' @name weights_from_pst
#' @title weights_from_pst
#' @import methods
#' @param pseudotime A matrix or data.frame of \[ncells\] by \[nCurves\].
#' @param ... Other parameters including:
methods::setGeneric(
name = "weights_from_pst",
signature = "pseudotime",
def = function(pseudotime, ...) {
standardGeneric("weights_from_pst")
}
)
#' @export
#' @name topologyTest
#' @title Differential Topology Test
#' @param ... parameters including:
#' @import methods
methods::setGeneric(
name = "topologyTest",
signature = "sds",
def = function(sds, ...) {
standardGeneric("topologyTest")
}
)
#' @export
#' @name progressionTest
#' @title Differential Progression Test
#' @param ... parameters including:
#' @import methods
methods::setGeneric(
name = "progressionTest",
signature = "pseudotime",
def = function(pseudotime, ...) {
standardGeneric("progressionTest")
}
)
#' @name fateSelectionTest
#' @title Differential fate selection Test
#' @param ... parameters including:
#' @import methods
methods::setGeneric(
name = "fateSelectionTest",
signature = "cellWeights",
def = function(cellWeights, ...) {
standardGeneric("fateSelectionTest")
}
)
#' @name nLineages
#' @title Number of lineages
#' @param ... parameters including:
#' @import methods
methods::setGeneric(
name = "nLineages",
signature = "sds",
def = function(sds, ...) {
standardGeneric("nLineages")
}
)
#' @name slingshot_conditions
#' @title Refitting slingshot per condition
#' @param ... parameters including:
#' @import methods
methods::setGeneric(
name = "slingshot_conditions",
signature = "sds",
def = function(sds, ...) {
standardGeneric("slingshot_conditions")
}
)
#' @name progressionTest_multipleSamples
#' @title Differential Progression Test with multiple samples
#' @param ... parameters including:
#' @import methods
methods::setGeneric(
name = "progressionTest_multipleSamples",
signature = "pseudotime",
def = function(pseudotime, ...) {
standardGeneric("progressionTest_multipleSamples")
}
)
#' @name fateSelectionTest_multipleSamples
#' @title Differential fate selection Test with multiple samples
#' @param ... parameters including:
#' @import methods
methods::setGeneric(
name = "fateSelectionTest_multipleSamples",
signature = "cellWeights",
def = function(cellWeights, ...) {
standardGeneric("fateSelectionTest_multipleSamples")
}
)
#' @name topologyTest_multipleSamples
#' @title Differential Topology Test with multiple samples
#' @param ... parameters including:
#' @import methods
methods::setGeneric(
name = "topologyTest_multipleSamples",
signature = "sds",
def = function(sds, ...) {
standardGeneric("topologyTest_multipleSamples")
}
)