Installation error

[gopuvenkat]

$ sudo pip3 install candis
Collecting candis
  Downloading candis-0.0.5-py2.py3-none-any.whl (1.4MB)
    100% |████████████████████████████████| 1.4MB 271kB/s 
Requirement already satisfied: django-htmlmin in /usr/local/lib/python3.5/dist-packages (from candis)
Collecting PyYAML (from candis)
  Downloading PyYAML-3.12.tar.gz (253kB)
    100% |████████████████████████████████| 256kB 257kB/s 
Requirement already satisfied: Flask in /usr/local/lib/python3.5/dist-packages (from candis)
Requirement already satisfied: Pillow in /usr/lib/python3/dist-packages (from candis)
Collecting javabridge (from candis)
  Downloading javabridge-1.0.15.tar.gz (1.3MB)
    100% |████████████████████████████████| 1.3MB 159kB/s 
Requirement already satisfied: addict in /usr/local/lib/python3.5/dist-packages (from candis)
Collecting rpy2 (from candis)
  Downloading rpy2-2.9.2.tar.gz (194kB)
    100% |████████████████████████████████| 194kB 277kB/s 
Collecting python-weka-wrapper3 (from candis)
  Downloading python-weka-wrapper3-0.1.3.tar.gz (85kB)
    100% |████████████████████████████████| 92kB 439kB/s 
Requirement already satisfied: numpy in /usr/local/lib/python3.5/dist-packages (from candis)
Requirement already satisfied: scipy in /usr/local/lib/python3.5/dist-packages (from candis)
Requirement already satisfied: pandas in /usr/local/lib/python3.5/dist-packages (from candis)
Requirement already satisfied: Cython in /usr/local/lib/python3.5/dist-packages (from candis)
Requirement already satisfied: matplotlib in /usr/local/lib/python3.5/dist-packages (from candis)
Requirement already satisfied: Flask-SocketIO in /usr/local/lib/python3.5/dist-packages (from candis)
Collecting pygraphviz (from candis)
  Downloading pygraphviz-1.3.1.zip (123kB)
    100% |████████████████████████████████| 133kB 187kB/s 
Requirement already satisfied: gunicorn in /usr/local/lib/python3.5/dist-packages (from candis)
Requirement already satisfied: seaborn in /usr/local/lib/python3.5/dist-packages (from candis)
Requirement already satisfied: requests in /usr/lib/python3/dist-packages (from candis)
Requirement already satisfied: liac-arff in /usr/local/lib/python3.5/dist-packages (from candis)
Requirement already satisfied: html5lib in /usr/local/lib/python3.5/dist-packages (from django-htmlmin->candis)
Requirement already satisfied: beautifulsoup4 in /usr/local/lib/python3.5/dist-packages (from django-htmlmin->candis)
Requirement already satisfied: Jinja2>=2.4 in /home/gopu/.local/lib/python3.5/site-packages (from Flask->candis)
Requirement already satisfied: Werkzeug>=0.7 in /usr/local/lib/python3.5/dist-packages (from Flask->candis)
Requirement already satisfied: itsdangerous>=0.21 in /usr/local/lib/python3.5/dist-packages (from Flask->candis)
Requirement already satisfied: click>=2.0 in /usr/local/lib/python3.5/dist-packages (from Flask->candis)
Requirement already satisfied: six in /home/gopu/.local/lib/python3.5/site-packages (from rpy2->candis)
Requirement already satisfied: pytz>=2011k in /home/gopu/.local/lib/python3.5/site-packages (from pandas->candis)
Requirement already satisfied: python-dateutil>=2 in /usr/local/lib/python3.5/dist-packages (from pandas->candis)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.5/dist-packages (from matplotlib->candis)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.5/dist-packages (from matplotlib->candis)
Requirement already satisfied: python-socketio>=1.6.1 in /usr/local/lib/python3.5/dist-packages (from Flask-SocketIO->candis)
Requirement already satisfied: webencodings in /usr/local/lib/python3.5/dist-packages (from html5lib->django-htmlmin->candis)
Requirement already satisfied: MarkupSafe>=0.23 in /home/gopu/.local/lib/python3.5/site-packages (from Jinja2>=2.4->Flask->candis)
Requirement already satisfied: python-engineio>=1.2.1 in /usr/local/lib/python3.5/dist-packages (from python-socketio>=1.6.1->Flask-SocketIO->candis)
Installing collected packages: PyYAML, javabridge, rpy2, python-weka-wrapper3, pygraphviz, candis
  Running setup.py install for PyYAML ... error
    Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-y_e82tw7/PyYAML/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-2aj7doh6-record/install-record.txt --single-version-externally-managed --compile:
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-3.5
    creating build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/dumper.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/parser.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/representer.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/constructor.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/__init__.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/resolver.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/scanner.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/events.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/loader.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/reader.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/error.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/tokens.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/serializer.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/cyaml.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/emitter.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/composer.py -> build/lib.linux-x86_64-3.5/yaml
    copying lib3/yaml/nodes.py -> build/lib.linux-x86_64-3.5/yaml
    running build_ext
    creating build/temp.linux-x86_64-3.5
    checking if libyaml is compilable
    x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c build/temp.linux-x86_64-3.5/check_libyaml.c -o build/temp.linux-x86_64-3.5/check_libyaml.o
    checking if libyaml is linkable
    x86_64-linux-gnu-gcc -pthread build/temp.linux-x86_64-3.5/check_libyaml.o -lyaml -o build/temp.linux-x86_64-3.5/check_libyaml
    skipping 'ext/_yaml.c' Cython extension (up-to-date)
    building '_yaml' extension
    creating build/temp.linux-x86_64-3.5/ext
    x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c ext/_yaml.c -o build/temp.linux-x86_64-3.5/ext/_yaml.o
    ext/_yaml.c:4:20: fatal error: Python.h: No such file or directory
    compilation terminated.
    error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
    
    ----------------------------------------
Command "/usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-y_e82tw7/PyYAML/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-2aj7doh6-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-y_e82tw7/PyYAML/

Operating System: Linux Mint 18.2 Sonya

[achillesrasquinha]

You might need a python-dev package for the same. Looks like you haven't installed Python Headers. Closing this, please reopen if persists.

[gopuvenkat]

Thanks!!
Got it running 😄

[achillesrasquinha]

Great!

[achillesrasquinha]

@gopuvenkat Would you like to write a setup article for the same? I'm trying to track what OSes have candis installed successfully.

We've got get-candis attempting to be a one command install. And of course we're keen to have a detailed guide here, partially empty!

[gopuvenkat]

I would like to write the setup article for candis. I have successfully installed candis on Linux Mint 18.2 Sonya.
I believe that it would be better if we explicitly mention that we have to use python3 instead of python

[gopuvenkat]

I tried get-candis on Ubuntu 16.04(through virtual box)

$ sudo python3 get-candis
Hit:1 http://security.ubuntu.com/ubuntu xenial-security InRelease
Hit:2 http://in.archive.ubuntu.com/ubuntu xenial InRelease
Hit:3 http://in.archive.ubuntu.com/ubuntu xenial-updates InRelease
Hit:4 http://in.archive.ubuntu.com/ubuntu xenial-backports InRelease
Reading package lists... Done                    
Reading package lists... Done
Building dependency tree      
Reading state information... Done
build-essential is already the newest version (12.1ubuntu2).
build-essential set to manually installed.
apt-transport-https is already the newest version (1.2.25).
apt-transport-https set to manually installed.
git is already the newest version (1:2.7.4-0ubuntu1.3).
software-properties-common is already the newest version (0.96.20.7).
software-properties-common set to manually installed.
The following packages were automatically installed and are no longer required:
  libllvm3.8 libmircommon5 libqmi-glib1 linux-headers-4.4.0-31 linux-headers-4.4.0-31-generic linux-image-4.4.0-31-generic
  linux-image-extra-4.4.0-31-generic ubuntu-core-launcher
Use 'sudo apt autoremove' to remove them.
The following additional packages will be installed:
  ca-certificates-java default-jdk-headless fonts-dejavu-extra java-common libcdt5 libcgraph6 libexpat1-dev libgif7 libgvc6 libgvpr2
  libice-dev libpathplan4 libpthread-stubs0-dev libpython3-dev libpython3.5-dev libsm-dev libx11-dev libx11-doc libxau-dev libxcb1-dev
  libxdmcp-dev libxt-dev openjdk-8-jdk openjdk-8-jdk-headless openjdk-8-jre openjdk-8-jre-headless python-apt python-pip-whl python-pycurl
  python3-setuptools python3-wheel python3.5-dev x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev
Suggested packages:
  default-java-plugin graphviz-doc libice-doc libsm-doc libxcb-doc libxt-doc openjdk-8-demo openjdk-8-source visualvm icedtea-8-plugin
  fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic python-apt-dbg python-apt-doc
  libcurl4-gnutls-dev python-pycurl-dbg python-pycurl-doc python-setuptools-doc
The following NEW packages will be installed:
  ca-certificates-java default-jdk default-jdk-headless default-jre default-jre-headless fonts-dejavu-extra graphviz java-common libcdt5
  libcgraph6 libexpat1-dev libgif7 libgvc6 libgvpr2 libice-dev libpathplan4 libpthread-stubs0-dev libpython3-dev libpython3.5-dev libsm-dev
  libx11-dev libx11-doc libxau-dev libxcb1-dev libxdmcp-dev libxt-dev openjdk-8-jdk openjdk-8-jdk-headless openjdk-8-jre
  openjdk-8-jre-headless python-apt python-pip-whl python-pycurl python-software-properties python3-dev python3-pip python3-setuptools
  python3-wheel python3.5-dev x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev
0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded.
Need to get 42.3 MB/81.8 MB of archives.
After this operation, 236 MB of additional disk space will be used.
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Get:10 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libx11-dev amd64 2:1.6.3-1ubuntu2 [642 kB]                                      
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Get:12 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libxt-dev amd64 1:1.1.5-0ubuntu1 [394 kB]                                      
Get:13 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 python-apt amd64 1.1.0~beta1build1 [139 kB]                                    
Get:14 http://in.archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip-whl all 8.1.1-2ubuntu0.4 [1,110 kB]                      
Get:15 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 python-pycurl amd64 7.43.0-1ubuntu1 [43.3 kB]                                  
Get:16 http://in.archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-software-properties all 0.96.20.7 [20.7 kB]                  
Get:17 http://in.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python3.5-dev amd64 3.5.2-2ubuntu0~16.04.4 [413 kB]                    
Get:18 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 python3-dev amd64 3.5.1-3 [1,186 B]                                            
Get:19 http://in.archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python3-pip all 8.1.1-2ubuntu0.4 [109 kB]                          
Get:20 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 python3-setuptools all 20.7.0-1 [88.0 kB]                                      
Get:21 http://in.archive.ubuntu.com/ubuntu xenial/universe amd64 python3-wheel all 0.29.0-1 [48.1 kB]                                        
Fetched 41.8 MB in 1min 40s (417 kB/s)                                                                                                      
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Unpacking python3-dev (3.5.1-3) ...
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Preparing to unpack .../python3-pip_8.1.1-2ubuntu0.4_all.deb ...
Unpacking python3-pip (8.1.1-2ubuntu0.4) ...
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Preparing to unpack .../python3-setuptools_20.7.0-1_all.deb ...
Unpacking python3-setuptools (20.7.0-1) ...
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Preparing to unpack .../python3-wheel_0.29.0-1_all.deb ...
Unpacking python3-wheel (0.29.0-1) ...
Processing triggers for man-db (2.7.5-1) ...
Processing triggers for ca-certificates (20170717~16.04.1) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.23-0ubuntu10) ...
Processing triggers for bamfdaemon (0.5.3~bzr0+16.04.20160824-0ubuntu1) ...
Rebuilding /usr/share/applications/bamf-2.index...
Processing triggers for desktop-file-utils (0.22-1ubuntu5.1) ...
Processing triggers for gnome-menus (3.13.3-6ubuntu3.1) ...
Processing triggers for mime-support (3.59ubuntu1) ...
Processing triggers for hicolor-icon-theme (0.15-0ubuntu1) ...
Processing triggers for fontconfig (2.11.94-0ubuntu1.1) ...
Processing triggers for doc-base (0.10.7) ...
Processing 1 added doc-base file...
Setting up java-common (0.56ubuntu2) ...
Setting up libgif7:amd64 (5.1.4-0.3~16.04) ...
Setting up fonts-dejavu-extra (2.35-1) ...
Setting up libcdt5 (2.38.0-12ubuntu2.1) ...
Setting up libcgraph6 (2.38.0-12ubuntu2.1) ...
Setting up libpathplan4 (2.38.0-12ubuntu2.1) ...
Setting up libgvc6 (2.38.0-12ubuntu2.1) ...
Setting up libgvpr2 (2.38.0-12ubuntu2.1) ...
Setting up graphviz (2.38.0-12ubuntu2.1) ...
Setting up libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ...
Setting up xorg-sgml-doctools (1:1.11-1) ...
Setting up x11proto-core-dev (7.0.31-1~ubuntu16.04.2) ...
Setting up libice-dev:amd64 (2:1.0.9-1) ...
Setting up libpthread-stubs0-dev:amd64 (0.3-4) ...
Setting up libpython3.5-dev:amd64 (3.5.2-2ubuntu0~16.04.4) ...
Setting up libpython3-dev:amd64 (3.5.1-3) ...
Setting up libsm-dev:amd64 (2:1.2.2-1) ...
Setting up libxau-dev:amd64 (1:1.0.8-1) ...
Setting up libxdmcp-dev:amd64 (1:1.1.2-1.1) ...
Setting up x11proto-input-dev (2.3.1-1) ...
Setting up x11proto-kb-dev (1.0.7-0ubuntu1) ...
Setting up xtrans-dev (1.3.5-1) ...
Setting up libxcb1-dev:amd64 (1.11.1-1ubuntu1) ...
Setting up libx11-dev:amd64 (2:1.6.3-1ubuntu2) ...
Setting up libx11-doc (2:1.6.3-1ubuntu2) ...
Setting up libxt-dev:amd64 (1:1.1.5-0ubuntu1) ...
Setting up python-apt (1.1.0~beta1build1) ...
Setting up python-pip-whl (8.1.1-2ubuntu0.4) ...
Setting up python-pycurl (7.43.0-1ubuntu1) ...
Setting up python-software-properties (0.96.20.7) ...
Setting up python3.5-dev (3.5.2-2ubuntu0~16.04.4) ...
Setting up python3-dev (3.5.1-3) ...
Setting up python3-pip (8.1.1-2ubuntu0.4) ...
Setting up python3-setuptools (20.7.0-1) ...
Setting up python3-wheel (0.29.0-1) ...
Setting up openjdk-8-jre-headless:amd64 (8u151-b12-0ubuntu0.16.04.2) ...
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up default-jre-headless (2:1.8-56ubuntu2) ...
Setting up openjdk-8-jre:amd64 (8u151-b12-0ubuntu0.16.04.2) ...
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode
Setting up default-jre (2:1.8-56ubuntu2) ...
Setting up openjdk-8-jdk-headless:amd64 (8u151-b12-0ubuntu0.16.04.2) ...
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/javah to provide /usr/bin/javah (javah) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
Setting up default-jdk-headless (2:1.8-56ubuntu2) ...
Setting up openjdk-8-jdk:amd64 (8u151-b12-0ubuntu0.16.04.2) ...
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up default-jdk (2:1.8-56ubuntu2) ...
Setting up ca-certificates-java (20160321ubuntu1) ...
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Certigna.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:PSCProcert.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:OpenTrust_Root_CA_G2.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Certinomis_-_Root_CA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:Certplus_Root_CA_G1.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:CA_Disig_Root_R1.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:ssl-cert-snakeoil.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:OpenTrust_Root_CA_G3.pem
Adding debian:Certplus_Root_CA_G2.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Secure_Global_CA.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:Certum_Root_CA.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:Certinomis_-_Autorité_Racine.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:EC-ACC.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:SecureTrust_CA.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:ACEDICOM_Root.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:OpenTrust_Root_CA_G1.pem
Adding debian:Izenpe.com.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:LuxTrust_Global_Root_2.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
done.
Processing triggers for libc-bin (2.23-0ubuntu10) ...
Processing triggers for ca-certificates (20170717~16.04.1) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...

done.
done.
Executing: /tmp/tmp.eC8itsXFSh/gpg.1.sh --keyserver
keyserver.ubuntu.com
--recv-keys
E298A3A825C0D65DFD57CBB651716619E084DAB9
gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com
gpg: key E084DAB9: public key "Michael Rutter <marutter@gmail.com>" imported
gpg: Total number processed: 1
gpg:              imported: 1  (RSA: 1)
Hit:1 http://security.ubuntu.com/ubuntu xenial-security InRelease
Hit:2 http://in.archive.ubuntu.com/ubuntu xenial InRelease
Hit:3 http://in.archive.ubuntu.com/ubuntu xenial-updates InRelease
Get:4 https://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease [3,590 B]
Hit:5 http://in.archive.ubuntu.com/ubuntu xenial-backports InRelease                
Get:6 https://cran.rstudio.com/bin/linux/ubuntu xenial/ Packages [68.2 kB]
Fetched 71.8 kB in 1s (45.1 kB/s)                      
Reading package lists... Done
Reading package lists... Done
Building dependency tree      
Reading state information... Done
The following packages were automatically installed and are no longer required:
  libllvm3.8 libmircommon5 libqmi-glib1 linux-headers-4.4.0-31 linux-headers-4.4.0-31-generic linux-image-4.4.0-31-generic
  linux-image-extra-4.4.0-31-generic ubuntu-core-launcher
Use 'sudo apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autotools-dev bzip2-doc cdbs debhelper dh-strip-nondeterminism dh-translations gfortran gfortran-5 icu-devtools intltool
  libblas-common libblas-dev libblas3 libbz2-dev libfile-stripnondeterminism-perl libgfortran-5-dev libgfortran3 libicu-dev libjpeg-dev
  libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmail-sendmail-perl libncurses5-dev libpcre3-dev libpcre32-3
  libpcrecpp0v5 libpng12-dev libreadline-dev libreadline6-dev libsigsegv2 libsys-hostname-long-perl libtinfo-dev m4 po-debconf
  python-pkg-resources python-scour python-six r-base-core r-base-dev r-base-html r-cran-boot r-cran-class r-cran-cluster r-cran-codetools
  r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial
  r-cran-survival r-doc-html r-recommended zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc libtool devscripts dh-make gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc
  libgfortran3-dbg liblapack-doc-man liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc libmail-box-perl python-setuptools
  python-rsvg python-cairo ess r-doc-info | r-doc-pdf r-mathlib texlive-base texlive-latex-base texlive-generic-recommended
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
The following NEW packages will be installed:
  autoconf automake autotools-dev bzip2-doc cdbs debhelper dh-strip-nondeterminism dh-translations gfortran gfortran-5 icu-devtools intltool
  libblas-common libblas-dev libblas3 libbz2-dev libfile-stripnondeterminism-perl libgfortran-5-dev libgfortran3 libicu-dev libjpeg-dev
  libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmail-sendmail-perl libncurses5-dev libpcre3-dev libpcre32-3
  libpcrecpp0v5 libpng12-dev libreadline-dev libreadline6-dev libsigsegv2 libsys-hostname-long-perl libtinfo-dev m4 po-debconf
  python-pkg-resources python-scour python-six r-base r-base-core r-base-dev r-base-html r-cran-boot r-cran-class r-cran-cluster
  r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet
  r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended zlib1g-dev
0 upgraded, 64 newly installed, 0 to remove and 0 not upgraded.
Need to get 66.6 MB of archives.
After this operation, 167 MB of additional disk space will be used.
Get:1 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB]
Get:2 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB]
Get:3 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB]
Get:4 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-core 3.4.3-1xenial0 [23.1 MB]
Get:5 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB]
Get:6 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB]
Get:7 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB]
Get:8 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 bzip2-doc all 1.0.6-8 [295 kB]
Get:9 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB]
Get:10 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB]
Get:11 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4,864 B]
Get:12 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB]
Get:13 http://in.archive.ubuntu.com/ubuntu xenial-updates/main amd64 intltool all 0.51.0-2ubuntu1.16.04.1 [45.0 kB]
Get:14 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 dh-translations all 129 [22.1 kB]
Get:15 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 1.10.0-3 [10.9 kB]
Get:16 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 python-pkg-resources all 20.7.0-1 [108 kB]
Get:17 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 python-scour all 0.32-1 [42.7 kB]
Get:18 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 cdbs all 0.4.130ubuntu2 [42.8 kB]
Get:19 http://in.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.6 [260 kB]
Get:20 http://in.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran-5-dev amd64 5.4.0-6ubuntu1~16.04.6 [291 kB]
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Get:23 http://in.archive.ubuntu.com/ubuntu xenial-updates/main amd64 icu-devtools amd64 55.1-7ubuntu0.3 [166 kB]                            
Get:24 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5,342 B]                                  
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Get:27 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libbz2-dev amd64 1.0.6-8 [29.1 kB]                                              
Get:28 http://in.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu-dev amd64 55.1-7ubuntu0.3 [8,532 kB]                            
Get:29 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg-turbo8-dev amd64 1.4.2-0ubuntu3 [254 kB]                                
Get:30 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1,552 B]                                        
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Get:32 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1,938 kB]                                      
Get:33 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1,948 kB]                                  
Get:34 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libsys-hostname-long-perl all 1.5-1 [11.7 kB]                                  
Get:35 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libmail-sendmail-perl all 0.79.16-1 [26.5 kB]                                  
Get:36 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libtinfo-dev amd64 6.0+20160213-1ubuntu1 [77.4 kB]                              
Get:37 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB]                            
Get:38 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libpcre32-3 amd64 2:8.38-3.1 [136 kB]                                          
Get:39 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libpcre3-dev amd64 2:8.38-3.1 [525 kB]                                          
Get:40 http://in.archive.ubuntu.com/ubuntu xenial-updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4.1 [168 kB]                      
Get:41 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libpng12-dev amd64 1.2.54-1ubuntu1 [184 kB]                                    
Get:42 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libreadline6-dev amd64 6.3-8ubuntu2 [124 kB]                                    
Get:43 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 libreadline-dev amd64 6.3-8ubuntu2 [992 B]                                      
Get:44 http://in.archive.ubuntu.com/ubuntu xenial/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB]                        
Get:45 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-boot 1.3-20-1xenial0 [619 kB]                                                
Get:46 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-cluster 2.0.6-2xenial0 [521 kB]                                              
Get:47 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-foreign 0.8.69-1xenial0 [244 kB]                                            
Get:48 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-mass 7.3-48-1xenial0 [1,101 kB]                                              
Get:49 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-kernsmooth 2.23-15-3xenial0 [90.4 kB]                                        
Get:50 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-lattice 0.20-35-1cran1xenial0 [719 kB]                                      
Get:51 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-nlme 3.1.131-3xenial0 [2,201 kB]                                            
Get:52 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-matrix 1.2-11-1xenial0 [2,379 kB]                                            
Get:53 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-mgcv 1.8-23-1xenial0 [2,542 kB]                                              
Get:54 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-rpart 4.1-12-1cran1xenial0 [886 kB]                                          
Get:55 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-survival 2.41-3-2xenial0 [5,137 kB]                                          
Get:56 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-class 7.3-14-2xenial0 [86.5 kB]                                              
Get:57 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-nnet 7.3-12-2xenial0 [110 kB]                                                
Get:58 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-spatial 7.3-11-1xenial0 [118 kB]                                            
Get:59 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-codetools 0.2-15-1cran1xenial0 [45.0 kB]                                    
Get:60 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-recommended 3.4.3-1xenial0 [2,738 B]                                              
Get:61 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base 3.4.3-1xenial0 [41.2 kB]                                                    
Get:62 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-dev 3.4.3-1xenial0 [4,410 B]                                                
Get:63 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-html 3.4.3-1xenial0 [86.8 kB]                                                
Get:64 https://cran.rstudio.com/bin/linux/ubuntu xenial/ r-doc-html 3.4.3-1xenial0 [555 kB]                                                  
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update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (3.6.0-2ubuntu2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:amd64 (1.0.6-8) ...
Setting up libicu-dev:amd64 (55.1-7ubuntu0.3) ...
Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3) ...
Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ...
Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ...
Setting up liblapack3 (3.6.0-2ubuntu2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.6.0-2ubuntu2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libsys-hostname-long-perl (1.5-1) ...
Setting up libmail-sendmail-perl (0.79.16-1) ...
Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ...
Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ...
Setting up libpcre32-3:amd64 (2:8.38-3.1) ...
Setting up libpcre3-dev:amd64 (2:8.38-3.1) ...
Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ...
Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1) ...
Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ...
Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ...
Setting up r-base-core (3.4.3-1xenial0) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-boot (1.3-20-1xenial0) ...
Setting up r-cran-cluster (2.0.6-2xenial0) ...
Setting up r-cran-foreign (0.8.69-1xenial0) ...
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Setting up r-cran-lattice (0.20-35-1cran1xenial0) ...
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Setting up r-cran-matrix (1.2-11-1xenial0) ...
Setting up r-cran-mgcv (1.8-23-1xenial0) ...
Setting up r-cran-rpart (4.1-12-1cran1xenial0) ...
Setting up r-cran-survival (2.41-3-2xenial0) ...
Setting up r-cran-class (7.3-14-2xenial0) ...
Setting up r-cran-nnet (7.3-12-2xenial0) ...
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Setting up r-cran-codetools (0.2-15-1cran1xenial0) ...
Setting up r-recommended (3.4.3-1xenial0) ...
Setting up r-base (3.4.3-1xenial0) ...
Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ...
Setting up r-base-html (3.4.3-1xenial0) ...
Setting up r-doc-html (3.4.3-1xenial0) ...
Setting up dh-strip-nondeterminism (0.015-1) ...
Setting up debhelper (9.20160115ubuntu3) ...
Setting up dh-translations (129) ...
Setting up cdbs (0.4.130ubuntu2) ...
Setting up r-base-dev (3.4.3-1xenial0) ...
Processing triggers for libc-bin (2.23-0ubuntu10) ...
gpg: keyring `/tmp/tmpgyfgnakj/secring.gpg' created
gpg: keyring `/tmp/tmpgyfgnakj/pubring.gpg' created
gpg: requesting key EEA14886 from hkp server keyserver.ubuntu.com
gpg: /tmp/tmpgyfgnakj/trustdb.gpg: trustdb created
gpg: key EEA14886: public key "Launchpad VLC" imported
gpg: no ultimately trusted keys found
gpg: Total number processed: 1
gpg:              imported: 1  (RSA: 1)
OK
Get:1 http://ppa.launchpad.net/webupd8team/java/ubuntu xenial InRelease [17.5 kB]
Hit:2 http://security.ubuntu.com/ubuntu xenial-security InRelease          
Hit:3 http://in.archive.ubuntu.com/ubuntu xenial InRelease                        
Hit:4 https://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease                  
Hit:5 http://in.archive.ubuntu.com/ubuntu xenial-updates InRelease                
Hit:6 http://in.archive.ubuntu.com/ubuntu xenial-backports InRelease                
Get:7 http://ppa.launchpad.net/webupd8team/java/ubuntu xenial/main amd64 Packages [2,908 B]
Get:8 http://ppa.launchpad.net/webupd8team/java/ubuntu xenial/main i386 Packages [2,460 B]
Get:9 http://ppa.launchpad.net/webupd8team/java/ubuntu xenial/main Translation-en [1,260 B]
Fetched 24.2 kB in 5s (4,320 B/s)    
Reading package lists... Done
Reading package lists... Done
Building dependency tree      
Reading state information... Done
The following packages were automatically installed and are no longer required:
  libllvm3.8 libmircommon5 libqmi-glib1 linux-headers-4.4.0-31 linux-headers-4.4.0-31-generic linux-image-4.4.0-31-generic
  linux-image-extra-4.4.0-31-generic ubuntu-core-launcher
Use 'sudo apt autoremove' to remove them.
The following additional packages will be installed:
  gsfonts-x11 oracle-java8-set-default
Suggested packages:
  binfmt-support visualvm ttf-baekmuk | ttf-unfonts | ttf-unfonts-core ttf-kochi-gothic | ttf-sazanami-gothic ttf-kochi-mincho
  | ttf-sazanami-mincho ttf-arphic-uming
The following NEW packages will be installed:
  gsfonts-x11 oracle-java8-installer oracle-java8-set-default
0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded.
Need to get 47.3 kB of archives.
After this operation, 237 kB of additional disk space will be used.
Get:1 http://ppa.launchpad.net/webupd8team/java/ubuntu xenial/main amd64 oracle-java8-installer all 8u161-1~webupd8~0 [33.1 kB]
Get:2 http://in.archive.ubuntu.com/ubuntu xenial/universe amd64 gsfonts-x11 all 0.24 [7,314 B]
Get:3 http://ppa.launchpad.net/webupd8team/java/ubuntu xenial/main amd64 oracle-java8-set-default all 8u161-1~webupd8~0 [6,830 B]
Fetched 47.3 kB in 1s (47.2 kB/s)              
Preconfiguring packages ...
Selecting previously unselected package oracle-java8-installer.
(Reading database ... 245480 files and directories currently installed.)
Preparing to unpack .../oracle-java8-installer_8u161-1~webupd8~0_all.deb ...
Unpacking oracle-java8-installer (8u161-1~webupd8~0) ...
Processing triggers for hicolor-icon-theme (0.15-0ubuntu1) ...
Processing triggers for shared-mime-info (1.5-2ubuntu0.1) ...
Processing triggers for bamfdaemon (0.5.3~bzr0+16.04.20160824-0ubuntu1) ...
Rebuilding /usr/share/applications/bamf-2.index...
Processing triggers for desktop-file-utils (0.22-1ubuntu5.1) ...
Processing triggers for gnome-menus (3.13.3-6ubuntu3.1) ...
Processing triggers for mime-support (3.59ubuntu1) ...
Setting up oracle-java8-installer (8u161-1~webupd8~0) ...
No /var/cache/oracle-jdk8-installer/wgetrc file found.
Creating /var/cache/oracle-jdk8-installer/wgetrc and
using default oracle-java8-installer wgetrc settings for it.
Downloading Oracle Java 8...
--2018-02-17 22:53:03--  http://download.oracle.com/otn-pub/java/jdk/8u161-b12/2f38c3b165be4555a1fa6e98c45e0808/jdk-8u161-linux-x64.tar.gz
Resolving download.oracle.com (download.oracle.com)... 23.58.10.127
Connecting to download.oracle.com (download.oracle.com)|23.58.10.127|:80... connected.
HTTP request sent, awaiting response... 302 Moved Temporarily
Location: https://edelivery.oracle.com/otn-pub/java/jdk/8u161-b12/2f38c3b165be4555a1fa6e98c45e0808/jdk-8u161-linux-x64.tar.gz [following]
--2018-02-17 22:53:04--  https://edelivery.oracle.com/otn-pub/java/jdk/8u161-b12/2f38c3b165be4555a1fa6e98c45e0808/jdk-8u161-linux-x64.tar.gz
Resolving edelivery.oracle.com (edelivery.oracle.com)... 23.58.24.132, 2600:140f:9:193::2d3e, 2600:140f:9:18c::2d3e
Connecting to edelivery.oracle.com (edelivery.oracle.com)|23.58.24.132|:443... connected.
HTTP request sent, awaiting response... 302 Moved Temporarily
Location: http://download.oracle.com/otn-pub/java/jdk/8u161-b12/2f38c3b165be4555a1fa6e98c45e0808/jdk-8u161-linux-x64.tar.gz?AuthParam=1518888305_301843c3e205efb0d2170a860940dd70 [following]
--2018-02-17 22:53:05--  http://download.oracle.com/otn-pub/java/jdk/8u161-b12/2f38c3b165be4555a1fa6e98c45e0808/jdk-8u161-linux-x64.tar.gz?AuthParam=1518888305_301843c3e205efb0d2170a860940dd70
Connecting to download.oracle.com (download.oracle.com)|23.58.10.127|:80... connected.
HTTP request sent, awaiting response... 200 Please login.
Length: unspecified [text/html]
Saving to: ‘jdk-8u161-linux-x64.tar.gz’

    0K                                                      17.4M=0s

2018-02-17 22:53:05 (17.4 MB/s) - ‘jdk-8u161-linux-x64.tar.gz’ saved [3890]

Download done.
Removing outdated cached downloads...
sha256sum mismatch jdk-8u161-linux-x64.tar.gz
Oracle JDK 8 is NOT installed.
dpkg: error processing package oracle-java8-installer (--configure):
subprocess installed post-installation script returned error exit status 1
E: Sub-process /usr/bin/dpkg returned an error code (1)
Traceback (most recent call last):
  File "get-candis", line 229, in <module>
    main(args)
  File "get-candis", line 223, in main
    code  = setup_candis(args)
  File "get-candis", line 181, in setup_candis
    popen(aptget, 'install', '-y', 'oracle-java8-installer')
  File "get-candis", line 77, in popen
    raise subprocess.CalledProcessError(code, params)
subprocess.CalledProcessError: Command '('/usr/bin/apt-get', 'install', '-y', 'oracle-java8-installer')' returned non-zero exit status 100