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getEphys.php
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getEphys.php
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<?php
include("permission_check.php");
include("function/ephys_unit_table.php"); // Include unit table
include("function/ephys_num_decimals_table.php"); // Include num decimals table
//$research = $_REQUEST['research'];
$research = $_REQUEST['research'];
$table = $_REQUEST['table_result'];
// Define all the necessary classes needed for the application
require_once('class/class.type.php');
require_once('class/class.property.php');
require_once('class/class.evidencepropertyyperel.php');
require_once('class/class.epdataevidencerel.php');
require_once('class/class.epdata.php');
require_once('class/class.evidenceevidencerel.php');
require_once('class/class.evidencefragmentrel.php');
require_once('class/class.fragment.php');
require_once('class/class.temporary_result_neurons.php');
function getUrlForLink($id,$img,$key,$color1)
{
$url = '';
if ($img != '')
{
$url ='<a href="property_page_morphology.php?id_neuron='.$id.'&val_property='.$key.'&color='.$color1.'&page=markers" target="_blank">'.$img.'</a>';
}
return ($url);
}
function print_ephys_value_and_hover($param_str, $i, $number_type, $id_ephys2, $id_type, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2)
{
include("function/ephys_unit_table.php");
include("function/ephys_num_decimals_table.php");
$num_decimals = $ephys_num_decimals_table[$param_str];
$units = $ephys_unit_table[$param_str];
if ($units == 'MOhm') {
$units = 'MΩ';
}
if ($unvetted_ephys2[$param_str] == 1) {
$color_unvetted = 'font4_unvetted';
}
else {
$color_unvetted = 'font4';
}
if ($ephys2[$param_str] != NULL) {
$formatted_value = number_format($ephys2[$param_str], $num_decimals, ".", "");
}
else {
$formatted_value = NULL;
}
if ($gt_ephys2[$param_str]) {
$gt_str = ">";
}
else {
$gt_str = "";
}
if ($error_ephys2[$param_str] != 0) {
$error_ephys2[$param_str] = number_format($error_ephys2[$param_str], $num_decimals,".","");
}
if ($value1_ephys2[$param_str] != 0) {
$value1_ephys2[$param_str] = number_format($value1_ephys2[$param_str], $num_decimals,".","");
}
if ($value2_ephys2[$param_str] != 0) {
$value2_ephys2[$param_str] = number_format($value2_ephys2[$param_str], $num_decimals,".","");
}
if ($param_str == 'sag_ratio') {
$span_class_str = 'link_right';
}
else {
$span_class_str = 'link_left';
}
if ($number_type - $i <= 4) {
$span_class_str = $span_class_str . '_bottom';
}
$outputStr = '';
if ($formatted_value != '') {
// print value in matrix
$outputStr = '<span class="'.$span_class_str.'"><a href="property_page_ephys.php?id_ephys='.$id_ephys2[$param_str].'&id_neuron='.$id_type.'&ep='.$param_str.'&page=1" target="_blank" class="'.$color_unvetted.'">' . $gt_str . $formatted_value;
// print hover box
//$print_str = $formatted_value . ' ± ' . $error_ephys2[$param_str] . ' ' . $units;
// $print_str = '±' . $value1_ephys2[$param_str] . ' ' . $units;
if ($error_ephys2[$param_str] == NULL) {
$print_str = ' [' . $value1_ephys2[$param_str] . ', ' . $value2_ephys2[$param_str] . '] ' . $units;
if ($value2_ephys2[$param_str] == NULL) {
$print_str = ' ' . $units;
}
}
else if ($error_ephys2[$param_str] != 0) {
$print_str = '±' . $error_ephys2[$param_str] . ' ' . $units;
}
$print_str = $print_str . ' ' . $protocol_ephys2[$param_str];
$outputStr.='<span class="' . $span_class_str . '">' . $print_str . '
';
$outputStr.='Measurements: ' . $tot_n1_ephys2[$param_str] . ' 
';
$outputStr.='Representative value selected from ' . $nn_ephys2[$param_str] . ' source';
if ($nn_ephys2[$param_str] > 1) {
$outputStr.='s';
}
//if ($protocol_ephys2[$param_str] != '') {
// $outputStr.='
' . $protocol_ephys2[$param_str];
//}
//else {
// $outputStr.='default conditions';
//}
$outputStr.='</span></a></span>';
}
return $outputStr;
}
// Check the UNVETTED color: ***************************************************************************
function check_unvetted1($id, $id_property, $evidencepropertyyperel) // $id = type_id,$id_property = propert_id,
{
//echo " Type id: ".$id." Property Id : ".$id_property;
$evidencepropertyyperel->retrive_unvetted($id, $id_property);
$unvetted1 = $evidencepropertyyperel->getUnvetted();
return ($unvetted1);
}
// *****************************************************************************************************
if (!isset($_GET['page']))
{
$page = 1;
}
else
{
$page = $_GET['page'];
}
//page=1&rows=5&sidx=1&sord=asc
// get how many rows we want to have into the grid - rowNum parameter in the grid
if (!isset($_GET['rows']))
{
$limit = 176;
}
else
{
$limit = $_GET['rows'];
}
// get index row - i.e. user click to sort. At first time sortname parameter -
// after that the index from colModel
if (!isset($_GET['sidx']))
{
$sidx = 1;
}
else
{
$sidx = $_GET['sidx'];
}
// sorting order - at first time sortorder
if (!isset($_GET['sord']))
{
$sord = "asc";
}
else
{
$sord = $_GET['sord'];
}
// if we not pass at first time index use the first column for the index or what you want
if (!$sidx)
{
$sidx = 1;
}
$type = new type($class_type);
//$research = $_GET['researchVar'];
if (isset($research)) // From page of search; retrieve the id from search_table (temporary) -----------------------
{
$table_result = $_REQUEST['table_result'];
$temporary_result_neurons = new temporary_result_neurons();
$temporary_result_neurons->setName_table($table_result);
$temporary_result_neurons->retrieve_id_array();
$n_id_res = $temporary_result_neurons->getN_id();
$number_type = 0;
for ($i2=0; $i2<$n_id_res; $i2++)
{
$id2 = $temporary_result_neurons->getID_array($i2); // Retrieve each ID corresponding to the id Array
if (strpos($id2, '0_') != 1)
{
$type->retrive_by_id($id2); // For each Id retrieve the type characteristics
$status = $type->getStatus(); // Retrieve the status for each id
if ($status == 'active')
{
$id_search[$number_type] = $id2;
$position_search[$number_type] = $type->getPosition();
$number_type = $number_type + 1;
}
}
} // END $i2
array_multisort($position_search, $id_search);
// sort($id_search);
}
else // not from search page --------------
{
if ($_GET['_search'] == 'false') // Condition to check ifthe
{
$type->retrive_id();
$number_type = $type->getNumber_type();
}
else
{
//Retrieve types by Search conditions
//echo "Search ".$_GET['_search'];
/* echo "Search Field : ".$_GET['searchField']; // � the name of the field defined in colModel
echo "Search String : ".$_GET['searchString']; // � the string typed in the search field
echo "Search Operator : ".$_GET['searchOper']; //� the operator choosen in the search field (ex. equal, greater than, �) */
}
}
$property = new property($class_property);
$evidencepropertyyperel = new evidencepropertyyperel($class_evidence_property_type_rel);
$epdataevidencerel = new epdataevidencerel($class_epdataevidencerel);
$evidenceevidencerel = new evidenceevidencerel($class_evidenceevidencerel);
$evidencefragmentrel = new evidencefragmentrel($class_evidencefragmentrel);
$fragment = new fragment ($class_fragment);
$epdata = new epdata($class_epdata);
//$hippo_select = $_SESSION['hippo_select'];
$count = $number_type;
//echo "The number of elements are ".$count." and the limit is ".$limit;
if ($count <= $limit)
{
$limit = $count;
}
// calculate the total pages for the query
if ($count > 0 && $limit > 0)
{
$total_pages = ceil($count/$limit);
}
else
{
$total_pages = 0;
}
// if for some reasons the requested page is greater than the total
// set the requested page to total page
if ($page > $total_pages)
{
$page=$total_pages;
}
// calculate the starting position of the rows
$start = $limit*$page - $limit;
// if for some reasons start position is negative set it to 0
// typical case is that the user type 0 for the requested page
if ($start < 0)
{
$start = 0;
}
$n_DG = 0;
$n_CA3 = 0;
$n_CA2 = 0;
$n_CA1 = 0;
$n_SUB = 0;
$n_EC = 0;
//header("Content-type: application/json;charset=utf-8");
$responce = (object) array('page' => $page, 'total' => $total_pages, 'records' =>$count, 'rows' => "");
$responce->page = $page;
$responce->total = $total_pages;
$responce->records = $count;
if ($research != "1")
{
//$type->retieve_ordered_List($start,$limit);
$type->retrive_id();
$number_type = $type->getNumber_type();
$type -> retrieve_id_by_subregion('DG');
$nDG = $type->getNumber_subregion_type();
$type -> retrieve_id_by_subregion('CA3');
$nCA3 = $type->getNumber_subregion_type();
$type -> retrieve_id_by_subregion('CA2');
$nCA2 = $type->getNumber_subregion_type();
$type -> retrieve_id_by_subregion('CA1');
$nCA1 = $type->getNumber_subregion_type();
$type -> retrieve_id_by_subregion('Sub');
$nSub = $type->getNumber_subregion_type();
$type -> retrieve_id_by_subregion('EC');
$nEC = $type->getNumber_subregion_type();
}
$neuron = array("DG"=>'DG('.$nDG.')',"CA3"=>'CA3('.$nCA3.')',"CA3c"=>'CA3('.$nCA3.')',"CA2"=>'CA2('.$nCA2.')',"CA1"=>'CA1('.$nCA1.')',"Sub"=>'Sub('.$nSub.')',"EC"=>'EC('.$nEC.')');
//$neuron = array("DG"=>'DG(36)',"CA3"=>'CA3(35)',"CA3c"=>'CA3(35)',"CA2"=>'CA2(5)',"CA1"=>'CA1(60)',"Sub"=>'Sub(7)',"EC"=>'EC(33)');
$neuronColor = array("DG"=>'#770000',"CA3"=>'#C08181',"CA3c"=>'#C08181',"CA2"=>'#FFCC00',"CA1"=>'#FF6103',"Sub"=>'#FFCC33',"EC"=>'#336633');
$ephys = array("0"=>"Vrest", "1"=>"Rin","2"=>"tm","3"=>"Vthresh", "4"=>"fast_AHP",
"5" =>"AP_ampl", "6" =>"AP_width", "7" =>"max_fr", "8" =>"slow_AHP", "9" =>"sag_ratio");
for ($i=0; $i<$number_type; $i++) //$number_type // Here he determines the number of active neuron types to print each row in the data table
{
if (isset($id_search))
{
$id = $id_search[$i];
}
else
{
$id = $type->getID_array($i);
}
$ephys2 = array("Vrest"=>NULL, "Rin"=>NULL,"tm"=>NULL, "Vthresh"=>NULL, "fast_AHP"=>NULL,
"AP_ampl" =>NULL, "AP_width" =>NULL, "max_fr" =>NULL, "slow_AHP" =>NULL, "sag_ratio" =>NULL);
$id_ephys2 = array("Vrest"=>NULL, "Rin"=>NULL,"tm"=>NULL, "Vthresh"=>NULL, "fast_AHP"=>NULL,
"AP_ampl" =>NULL, "AP_width" =>NULL, "max_fr" =>NULL, "slow_AHP" =>NULL, "sag_ratio" =>NULL);
$unvetted_ephys2 = array("Vrest"=>NULL, "Rin"=>NULL,"tm"=>NULL, "Vthresh"=>NULL, "fast_AHP"=>NULL,
"AP_ampl" =>NULL, "AP_width" =>NULL, "max_fr" =>NULL, "slow_AHP" =>NULL, "sag_ratio" =>NULL);
$soma_location = array("DG:SMo"=>0, "DG:SMi"=>1, "DG:SG"=>2, "DG:H"=>3,
"CA3:SLM"=>0, "CA3:SR"=>1, "CA3:SL"=>2, "CA3:SP"=>3, "CA3:SO"=>4,
"CA2:SLM"=>0, "CA2:SR"=>1, "CA2:SP"=>2, "CA2:SO"=>3,
"CA1:SLM"=>0, "CA1:SR"=>1, "CA1:SP"=>2, "CA1:SO"=>3,
"SUB:SM"=>0, "SUB:SP"=>1, "SUB:PL"=>2,
"EC:I"=>0, "EC:II"=>1, "EC:III"=>2, "EC:IV"=>3, "EC:V"=>4, "EC:VI"=>5);
$type->retrive_by_id($id); // Retrieve id
$nickname = $type->getNickname(); // Retrieve nick name
$position = $type->getPosition(); // Retrieve the position
$subregion = $type->getSubregion(); // Retrieve the sub region
//$neurite_pattern_value = substr($name,6,4);
$excit_inhib =$type-> getExcit_Inhib();
$evidencepropertyyperel->retrive_Property_id_by_Type_id($id); // Retrieve distinct Property ids for each type id
$n_property = $evidencepropertyyperel->getN_Property_id(); // Count of the number of properties for a given type id
for($j=0 ; $j<$n_property ; $j++) //To obtain soma location
{
$prop_id = $evidencepropertyyperel -> getProperty_id_array($j);
$property->retrive_by_id($prop_id);
$part1 = $property->getPart();
$rel1 = $property->getRel();
if(($property->getPart() == 'somata') && ($property->getRel() == 'in'))
{
$object_value = $property->getVal();
$soma_position = $soma_location["$object_value"];
}
}
$q = 0;
for ($i1=0; $i1<count($ephys); $i1++) // check for each name Eg. Vrest,Rin,tm etc..
{
$name_epys= $ephys[$i1]; // retrieve each property for the corresponding index value
$property->retrive_ID(3, $name_epys, NULL, NULL); // Retrieve Id for a particular name_ephys
$n_id_property = $property->getNumber_type(); // Retrive the count of property ids
for ($ii2=0; $ii2<$n_id_property; $ii2++)
{
$tot_value = 0;
$tot_n = 0;
$tot_n_squared = 0;
$weighted_sum = 0;
$error_sum = 0;
$final_value = 0;
$n_Value = 0;
$evidence_id = NULL;
$property_id = $property->getProperty_id($ii2); // Get property id corresponding to a particular index
// Keep only property_id related by id_type and retrieve id_evidence by these id:
$evidencepropertyyperel->retrive_evidence_id($property_id, $id); // Retrive evidence ids for a particular property
$nn = $evidencepropertyyperel->getN_evidence_id(); // get count of all evidences for a particular property id
$nn_rep_value = 0;
if ($nn != 0) // there are more VALUE1:
{
$max_n_measurement = 0;
for ($t1=0; $t1<$nn; $t1++)
{
$evidence_id = $evidencepropertyyperel->getEvidence_id_array($t1); // At each index of the array get the Evidence id array
$epdataevidencerel->retrive_Epdata($evidence_id); // For each evidence id retrive the EpdataId
$epdata_id = $epdataevidencerel->getEpdata_id();
$epdata->retrive_all_information($epdata_id); // Retrieve all information for a given epdata
$rep_value = $epdata->getRep_value();
// Borrowed from property_page_ephys.php ---------->
// with evidence_id1 it needs to have evidence_id2 that is used for the id_article
$evidenceevidencerel -> retrive_evidence2_id($evidence_id);
$evidence_id_2 = $evidenceevidencerel -> getEvidence2_id_array(0);
// retrieve information about fragment: --------------
$evidencefragmentrel -> retrive_fragment_id_1($evidence_id_2);
$id_fragment = $evidencefragmentrel -> getFragment_id();
$fragment -> retrive_by_id($id_fragment);
$page_loc = $fragment -> getPage_location();
// Extract page_location and protocol
$protoc = explode(",", $page_loc);
$page_location=$protoc[0];
//$locationValue1[$i1] = str_replace(' ', '', $locationValue[$i1]);
//$location_protoc = explode(",", $locationValue1[$i1]);
//$location_protocol = $location_protoc[1];
//$location_animal = strpos($locationValue1[$i1],'mouse');
$protoc[1] = str_replace(' ', '', $protoc[1]);
$protoc_pieces = explode("|", $protoc[1]);
if($protoc_pieces[1] != 'p')
{
$protoc_pieces[1] = 'p';
}
if($protoc_pieces[0] != 'm')
{
$protoc_pieces[0] = 'm';
}
// <---------- Borrowed from property_page_ephys.php
$value1 = $epdata->getValue1(); // Retrieve value 1 for a give epdata id
$value2 = $epdata->getValue2(); // Retrieve value 2 for a give epdata id
$error = $epdata->getError(); // Retrieve error value for a given epdata id
$gt_value = $epdata->getGt_value();
$std_sem = $epdata->getStd_sem();
$non_default_conditions_str = "";
if (isset($rep_values) && $rep_value != NULL)
{
$nn_rep_value += 1;
// if (strpos($rep_value,'mice') !== false) {
if ($protoc_pieces[0] == 'm'){
$non_default_conditions_str = "(mice, ";
}
else {
$non_default_conditions_str = "(rats, ";
}
// if (strpos($rep_value,'microelectrodes') !== false) {
if ($protoc_pieces[1] == 'e'){
$non_default_conditions_str = $non_default_conditions_str . "microelectrodes, ";
}
else {
$non_default_conditions_str = $non_default_conditions_str . "patch clamp, ";
}
// if (strpos($rep_value,'room') !== false) {
if ($protoc_pieces[3] == 'r'){
$non_default_conditions_str = $non_default_conditions_str . "room temp)";
}
else {
$non_default_conditions_str = $non_default_conditions_str . "body temp)";
}
// $value1 = $epdata->getValue1(); // Retrieve value 1 for a give epdata id
// $value2 = $epdata->getValue2(); // Retrieve value 2 for a give epdata id
// $error = $epdata->getError(); // Retrieve error value for a given epdata id
// $gt_value = $epdata->getGt_value();
// $std_sem = $epdata->getStd_sem();
if ($value2) // if value 2 is set
{
$final_value = ($value1 + $value2) / 2; // final value for that particular evidence id is the mean
//$final_value_array[$t1] = $final_value;
}
else
{
$final_value = $value1; // else final value for that evidence is value 1
//$final_value_array[$t1] = $value1;
}
$n_measurement = $epdata->getN();
if (!$n_measurement) // if n_measurement is not set
{
if ($value2) {
$n_measurement = 2; // n default for a range is 2
}
else {
$n_measurement = 1; // n_measurement is 1
}
}
//$n_array[$t1] = $n_measurement;
//$tot_value = $tot_value + $final_value; // Total value is calculated as the sum of all evidences
//$tot_n = $tot_n + $n_measurement; // Total of all n values for evidences for a given property
//$tot_n_squared = $tot_n_squared + pow($n_measurement,2); // Total of all (n*n) values for evidences for a given property
//$weighted_sum = $weighted_sum + ($final_value * $n_measurement); // Product of final_value and n of all evidences for property
//$error_sum += $error;
// PICK THE REP VALUE WITH THE BIGGEST N (choose first one if tied)
if ($n_measurement > $max_n_measurement) {
$max_n_measurement = $n_measurement;
$max_n_epdata_value = $final_value;
$final_value_array[$t1] = $final_value;
$n_array[$t1] = $n_measurement;
if ($std_sem == 'sem') {
$representative_error = $error*sqrt($n_measurement);
}
elseif ($std_sem == 'range' OR $std_sem == 'single_value') {
$representative_error = NULL;
}
else {
$representative_error = $error;
}
$max_n_statistics_strng = $representative_error;
if ($gt_value != NULL) {
$max_gt_flag = 1;
}
else{
$max_gt_flag = 0;
}
$max_n_non_default_conditions_str = $non_default_conditions_str;
}
}
else
{
$final_value_array[$t1] = 0;
$n_array[$t1] = 0;
}
}
/*
// calculate weighted mean
if ($tot_n != 0) {
$mean_value = $weighted_sum / $tot_n; // Calculate the mean for each property
}
else {
$mean_value = -999999; // print a value to indicate an error; div by 0
}
// calculated weighted variance
$weighted_var_sum = 0;
for ($y2=0; $y2<$nn_rep_value; $y2++) {
$weighted_var_sum = $weighted_var_sum + ($n_array[$y2] * pow($final_value_array[$y2] - $mean_value, 2));//calculate weighted variable sum
}
$weighted_var = $weighted_var_sum / $tot_n;
$weighted_std = sqrt($weighted_var);
*/
//$ephys2[$name_epys] = $mean_value; // Store the mean value for each header name
$id_ephys2[$name_epys] = $epdata_id; // Store the epdata id for each epdata
$nn_ephys2[$name_epys] = $nn; // Store the n measurement for each header name
$ephys2[$name_epys] = $max_n_epdata_value;
$tot_n1_ephys2[$name_epys] = $max_n_measurement;
$protocol_ephys2[$name_epys] = $max_n_non_default_conditions_str;
$error_ephys2[$name_epys] = $max_n_statistics_strng;
$gt_ephys2[$name_epys] = $max_gt_flag;
$value1_ephys2[$name_epys] = $value1;
$value2_ephys2[$name_epys] = $value2;
//$nn_ephys2[$name_epys] = $nn_rep_value; // Store the n measurement for each header name
//$tot_n1_ephys2[$name_epys] = $tot_n; // Store the total for each header name
/*$weighted_std_ephys2[$name_epys] = $weighted_std; // Store the weighted standard deviation
if ($nn_rep_value > 0)
{
$weighted_std_ephys2[$name_epys] = $error_sum / $nn_rep_value;
}
else
{
$weighted_std_ephys2[$name_epys] = 0;
}
*/
}
// Check the UNVETTED color: ***************************************************************************
$evidencepropertyyperel->retrive_unvetted($id, $property_id); // For a particular type and property id check if vetted or unvetted
$unvetted = $evidencepropertyyperel->getUnvetted();
$unvetted_ephys2[$name_epys] = $unvetted;
$property_id_ephys2[$name_epys] = $property_id;
}
}
if ($excit_inhib == 'e') {
$fontColor='#339900';
}
elseif ($excit_inhib == 'i') {
$fontColor='#CC0000';
}
preg_match('!\d+!',substr($type->getName(),strpos($type->getName(), ')')),$matches);
$neurite_pattern=str_split($matches[0]);
$new_neurite_pattern = str_replace($neurite_pattern[$soma_position], "<strong>".$neurite_pattern[$soma_position]."</strong>", $neurite_pattern);
$neurite_pattern_new = implode('',$new_neurite_pattern);
//print_r($neurite_pattern_new);
if ($type->get_type_subtype($id) == 'subtype')
{
$fontColor='#000099';
if ($excit_inhib == 'i')
$fontColor='#CC5500';
$rows[$i]['cell'] =
array('<span style="color:'.$neuronColor[$subregion].'"><strong>'.$neuron[$subregion].'</strong></span>',
" ".'<a href="neuron_page.php?id='.$id.'" target="blank" title="'.$type->getName().'"><font color="'.$fontColor.'">'.$nickname.'</font></a>',
'<span style="color:black">'.$neurite_pattern_new.'</span>',
print_ephys_value_and_hover('Vrest' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('Rin' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('tm' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('Vthresh' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('fast_AHP' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('AP_ampl' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('AP_width' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('max_fr' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('slow_AHP' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('sag_ratio', $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2)
);
}
else
{
$rows[$i]['cell'] =
array( '<span style="color:'.$neuronColor[$subregion].'"><strong>'.$neuron[$subregion].'</strong></span>',
'<a href="neuron_page.php?id='.$id.'" target="blank" title="'.$type->getName().'"><font color="'.$fontColor.'">'.$nickname.'</font></a>',
'<span style="color:black">'.$neurite_pattern_new.'</span>',
print_ephys_value_and_hover('Vrest' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('Rin' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('tm' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('Vthresh' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('fast_AHP' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('AP_ampl' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('AP_width' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('max_fr' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('slow_AHP' , $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2),
print_ephys_value_and_hover('sag_ratio', $i, $number_type, $id_ephys2, $id, $unvetted_ephys2, $ephys2, $nn_ephys2, $tot_n1_ephys2, $error_ephys2, $protocol_ephys2, $gt_ephys2, $value1_ephys2, $value2_ephys2)
);
}
$responce->rows = $rows;
}
//echo json_encode($responce);
?>