brew cleanup attempts to remove unremovable files (in my case, it is corporate management software I have no control over) unreleated to Homebrew
#11783
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Can you show the output of ? As a workaround, you can set Also, what's the output of ? |
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I've modified the permissions of the dgagent folder and attempted to delete it manually, but the dylib is loaded in a running process that I cannot kill. I tried this before realizing that the process is the corporate management software required by my company, so I neither can, nor want, to remove it. |
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Yes, |
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brew configoutputbrew doctoroutputbrew updateand am still able to reproduce my issue.brew doctorand that did not fix my problem.What were you trying to do (and why)?
I was attempting to upgrade all installed packages with
brew upgrade. Because it has been a while, this required an automaticbrew cleanup. When it encountered non-Homebrew files in the /usr/local/lib, it attempted to remove them for some reason. The directory in question is/usr/local/lib/dgagent, which is part of the corporate management software on my machine. I do not have the ability to remove this folder or kill the process which is using the library file within (nor would I want to, since it is required for my employment). Homebrew's assumption that it can remove anything in/usr/localseems a bit aggressive to say the least.What happened (include all command output)?
==> Upgrading 76 outdated packages:
rubberband 1.9.1 -> 1.9.2
mosh 1.3.2_15 -> 1.3.2_16
syncthing 1.15.1 -> 1.18.0
plantuml 1.2021.4 -> 1.2021.9
libheif 1.11.0_2 -> 1.12.0
libtiff 4.2.0 -> 4.3.0
libtool 2.4.6_3 -> 2.4.6_4
ffmpeg 4.4 -> 4.4_2
xorgproto 2021.3 -> 2021.4
pandoc 2.13 -> 2.14.1
pssh 2.3.1_3 -> 2.3.1_4
libksba 1.5.1 -> 1.6.0
gpgme 1.15.1 -> 1.16.0
go 1.16.3 -> 1.16.6
ghostscript 9.53.3_1 -> 9.54.0
nettle 3.7.2 -> 3.7.3
cmake 3.20.1 -> 3.21.0
libuv 1.41.0 -> 1.42.0
freetype 2.10.4 -> 2.11.0
boost 1.75.0_2 -> 1.76.0
pango 1.48.4 -> 1.48.7
zimg 3.0.1 -> 3.0.2
libogg 1.3.4 -> 1.3.5
icu4c 68.2 -> 69.1
harfbuzz 2.8.0 -> 2.8.2
duck 7.8.5.34493 -> 7.9.3.35019
glib 2.68.1 -> 2.68.3
zsh-completions 0.32.0 -> 0.33.0_1
netpbm 10.86.21 -> 10.86.23
aom 3.0.0 -> 3.1.2
awscli 2.1.38 -> 2.2.22
srt 1.4.2 -> 1.4.3
gobject-introspection 1.68.0 -> 1.68.0_1
sshfs 2.10_2 -> 3.7.2
bash 5.1.4 -> 5.1.8
openexr 2.5.5 -> 3.0.5_1
libgcrypt 1.9.2 -> 1.9.3_1
wfxr/code-minimap/code-minimap 0.5.1 -> 0.6.0
libxfixes 5.0.3 -> 6.0.0
libmaxminddb 1.5.2 -> 1.6.0
macvim 8.2-171 -> 8.2-171_1
snappy 1.1.8 -> 1.1.9
librsvg 2.50.4 -> 2.50.7
graphviz 2.47.0 -> 2.48.0
dav1d 0.8.2 -> 0.9.0
tmux 3.2 -> 3.2a
libtasn1 4.16.0_1 -> 4.17.0
pcre2 10.36 -> 10.37_1
eslint 7.24.0 -> 7.31.0
notmuch 0.31.4_1 -> 0.32.2
nnn 4.0 -> 4.2
leptonica 1.80.0 -> 1.81.1
pcre 8.44 -> 8.45
x264 r3049 -> r3060
libidn 1.36 -> 1.38
node 15.14.0 -> 16.5.0
libomp 12.0.0 -> 12.0.1
neovim 0.4.4_2 -> 0.5.0
talloc 2.3.2 -> 2.3.3
ripgrep 12.1.1 -> 13.0.0
libass 0.15.0 -> 0.15.1
you-get 0.4.1520 -> 0.4.1536
imagemagick 7.0.11-8 -> 7.1.0-4_1
guile 3.0.5 -> 3.0.7
gnupg 2.2.27 -> 2.3.1_1
jasper 2.0.31 -> 2.0.32
clementtsang/bottom/bottom 0.5.7 -> 0.6.3
p11-kit 0.23.22 -> 0.24.0
libx11 1.7.0 -> 1.7.2
luv 1.41.0-0 -> 1.41.1-0
protobuf 3.15.8 -> 3.17.3
wireshark 3.4.4 -> 3.4.7
automake 1.16.3_1 -> 1.16.4
git 2.31.1 -> 2.32.0_1
python@3.9 3.9.4 -> 3.9.6
gnutls 3.6.15 -> 3.6.16
==> Upgrading icu4c
68.2 -> 69.1
==> Downloading https://ghcr.io/v2/homebrew/core/icu4c/manifests/69.1
==> Downloading https://ghcr.io/v2/homebrew/core/icu4c/blobs/sha256:3f75c907dadc6e7e647920506e740a312e56279369f3c9708cac54b018410120
==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sha256:3f75c907dadc6e7e647920506e740a312e56279369f3c9708cac54b018410120?se=2021-07-27T21%3A00%3A00Z&sig=BaoiU80loY6gnPftUNwH1uWE2FIbAgTVmSHK6DpGeIY%3D&sp=r&spr=https&sr=b&sv=2019-12-12
==> Pouring icu4c--69.1.catalina.bottle.tar.gz
🍺 /usr/local/Cellar/icu4c/69.1: 259 files, 72.8MB
==>
brew cleanuphas not been run in 30 days, running now...Removing: /usr/local/Cellar/icu4c/68.2... (259 files, 72.5MB)
Error: Operation not permitted @ dir_s_rmdir - /usr/local/lib/dgagent
What did you expect to happen?
I expected Homebrew to clean and upgrade files associated with it and not remove unrelated files necessary to my use of the system.
Step-by-step reproduction instructions (by running
brewcommands)The text was updated successfully, but these errors were encountered: