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thesis.tex
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thesis.tex
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\documentclass[doctor,12pt]{styles/iscs-thesis}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% import necessary packages %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\usepackage{newtxtext,newtxmath} % change font to "Times New Roman"
\usepackage[nottoc]{tocbibind} % Includes "References" in the table of contents
\usepackage[ % Add clickable hyper links to references and TOC
hidelinks,
dvipdfmx,
colorlinks = true,
linkcolor = black,
urlcolor = blue, % turn URL link to blue color
citecolor = black,
anchorcolor = black]{hyperref}
\usepackage[round,sort]{natbib} % author-year style references, *.bib,requires BibTeX format; sort by author name
\usepackage{indentfirst} % the first paragraph also indent with 2 characters
\usepackage[dvipdfmx]{graphicx} % zoom the table/figure to the proper size
\usepackage{bmpsize} % previous dvipdfm option and this to fix pdf figure error
\usepackage[ % Bold the Fig. and Table.
labelfont=bf,
textfont=md]{caption}
\usepackage{threeparttable} % add notes to the table bottom
\usepackage{chngpage}
\usepackage[nobiblatex]{xurl} % long url line breaks
\usepackage{lscape} % landscape full page figures
\usepackage{setspace} % set page for published paper abstract linespace
\usepackage[normalem]{ulem} % better view for underline
\usepackage{amsmath} % package for matrix formular
\usepackage{pifont} % package for special symbol
% \usepackage[left,pagewise]{lineno} % the line numbers for each page
\usepackage[ % the acronym throughput the thesis
toc,
acronym,
nonumberlist]{glossaries}
\makenoidxglossaries
\preto\chapter{\glsresetall} % expand acronyms for first-time use within each chapter
% \usepackage[final]{changes}
% \usepackage[defaultcolor=red]{changes} % change tracking
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\urlstyle{same} % the \url{} links also use Times New Roman font
% \setlength{\parskip}{5pt} % if you need space before each paragraph, open it
\usepackage{geometry} % change the page setting to standard MS Word A4
\geometry{a4paper,left=3.17cm,right=3.17cm,top=2.54cm,bottom=2.54cm}
\setcounter{secnumdepth}{3} % add the subsubsection into contents
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% add Fig. Sx and Table Sx for supplementary section
\newcommand{\appendixsection}{%
\section{Appendix}% Set supplementary section
\setcounter{table}{0}% Reset table counter
\let\oldthetable\thetable% Capture table numbering scheme
\renewcommand{\thetable}{S\oldthetable}% Prefix table number with S
\setcounter{figure}{0}% Reset figure counter
\let\oldthefigure\thefigure% Capture figure numbering scheme
\renewcommand{\thefigure}{S\oldthefigure}% Prefix figure number with S
\let\oldchapter\chapter% Copy \chapter into \oldchapter
\renewcommand{\chapter}{% Update \chapter
\let\thefigure\oldthefigure% Copy \thefigure into \oldthefigure
\let\thetable\oldthetable
\let\chapter\oldchapter% Restore original \chapter
\oldchapter% Call original \chapter
}
}
% 論文の種類とフォントサイズをオプションに
%-------------------
% \etitle{Studies on 3D-based Plant Phenotyping by Multi-scale Data Fusion}
% \jtitle{マルチスケールデータ融合による植物表現型の３次元計測に関する研究}
%
% \eauthor{Haozhou Wang}
% \jauthor{王浩舟}
% \jsupervisor{加藤洋一郎 東京大学教授}
% \jsupervisor{加藤洋一郎}
% \senkou{農学国際専攻(IPADS)}
% \supervisortitle{ 郭威 東京大学准教授}
% \supervisortitle{東京大学教授}
% \date{令和 3 年博士課程入学}
%-------------------
\include{abbreviations.tex}
\begin{document}
% replace the following command in the original template
% \maketitle
\begin{titlepage}
\begin{center}
\vspace*{2.5cm}
{\LARGE Doctoral Thesis (博士論文)}
\vspace*{2cm}
\begin{spacing}{4.5}
\textbf{\Huge Studies on 3D-based plant phenotyping by multi-scale data fusion}
\end{spacing}
\vspace{0.5cm}
\textrm{(マルチスケールデータ融合による植物表現型の３次元計測に関する研究)}
\vspace{7.5cm}
\textrm{\Huge 王 浩舟}
\vspace{0.5cm}
\textrm{\Large Wang~~Haozhou}
\vfill
\end{center}
\end{titlepage}
\pagenumbering{roman}
% \linenumbers
\include{abstract.tex}
\frontmatter %% 前付け
\tableofcontents % 目次
\listoffigures % 図目次
\listoftables % 表目次
%\lstlistoflistings % ソースコード目次
\glsfindwidesttoplevelname
\setglossarystyle{alttree}
\printnoidxglossary[type=acronym, title=List of Abbreviations, toctitle=List of Abbreviations]
%-------------------
\mainmatter %% 本文
\doublespacing
\include{chapter1.tex}
\include{chapter2.tex}
\include{chapter3.tex}
\include{chapter4.tex}
\include{chapter5.tex}
\include{chapter6.tex}
\include{acknowledgement.tex}
%-------------------
\begin{singlespace}
\bibliographystyle{elsarticle-harv} % 参考文献
\bibliography{styles/bibtex} %
\end{singlespace}
%-------------------
\include{publication.tex}
\end{document}