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setup.cfg
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setup.cfg
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#######################
# Setup Configuration #
#######################
[metadata]
name = pypesto
version = attr: pypesto.version.__version__
description = python-based Parameter EStimation TOolbox
long_description = file: README.md
long_description_content_type = text/markdown
# URLs
url = https://github.com/icb-dcm/pypesto
download_url = https://github.com/icb-dcm/pypesto/releases
project_urls =
Bug Tracker = https://github.com/icb-dcm/pypesto/issues
Documentation = https://pypesto.readthedocs.io
Changelog = https://pypesto.readthedocs.io/en/latest/changelog.html
# Author information
author = The pyPESTO developers
author_email = yannik.schaelte@gmail.com,jakob.vanhoefer@uni-bonn.de
maintainer = Yannik Schaelte, Jakob Vanhoefer
maintainer_email = yannik.schaelte@gmail.com,jakob.vanhoefer@uni-bonn.de
# License information
license = BSD-3-Clause
license_file = LICENSE
# Search tags
classifiers =
Development Status :: 4 - Beta
License :: OSI Approved :: BSD License
Operating System :: OS Independent
Programming Language :: Python
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.6
keywords =
parameter inference
optimization
sampling
profiles
ODE
AMICI
systems biology
[options]
install_requires =
numpy >= 1.19.1
scipy >= 1.5.2
pandas >= 1.2.0
cloudpickle >= 1.5.0
matplotlib >= 3.3.0
seaborn >= 0.10.0
h5py >= 3.1.0
tqdm >= 4.46.0
python_requires = >=3.6
include_package_data = True
# Where is my code
packages = find:
[options.packages.find]
include = pypesto*
[options.extras_require]
amici =
amici >= 0.11.16
petab =
petab >= 0.1.14
ipopt =
ipopt
dlib =
dlib >= 19.19.0
nlopt =
nlopt >= 2.6.2
pyswarm =
pyswarm >= 0.6
cmaes =
cma >= 3.0.3
pyswarms =
pyswarms >= 1.3.0
fides =
fides >= 0.3.0
mpi =
mpi4py >= 3.0.3
pymc3 =
arviz >= 0.8.1, < 0.9.0
theano >= 1.0.4
packaging >= 20.0
pymc3 >= 3.8, < 3.9.2
aesara =
aesara >= 2.0.5
emcee =
emcee >= 3.0.2
mltools =
umap-learn >= 0.5.1
scikit-learn >= 0.24.1
doc =
sphinx >= 3.1.0, < 4.0.0
nbsphinx >= 0.7.0
nbconvert >= 5.6.1
sphinx-rtd-theme >= 0.4.3
sphinx_autodoc_typehints >= 1.11.1
recommonmark >= 0.6.0
ipython >= 7.18.1
example =
notebook >= 6.1.4
test =
pytest >= 5.4.3
pytest-cov >= 2.10.0
gitpython >= 3.1.7
pytest-rerunfailures >= 9.1.1
autograd >= 1.3
test_petab =
petabtests >= 0.0.0a6
[bdist_wheel]
# Requires python 3
universal = False