/
Dockstore.json
68 lines (68 loc) · 1.39 KB
/
Dockstore.json
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{
"run-id": "run_id",
"tumor-bam":
{
"path":"https://dcc.icgc.org/api/v1/download?fn=/PCAWG/reference_data/data_for_testing/HCC1143_ds/HCC1143.bam",
"class":"File"
},
"normal-bam":
{
"path":"https://dcc.icgc.org/api/v1/download?fn=/PCAWG/reference_data/data_for_testing/HCC1143_ds/HCC1143_BL.bam",
"class":"File"
},
"reference-gz":
{
"path": "https://dcc.icgc.org/api/v1/download?fn=/PCAWG/reference_data/pcawg-bwa-mem/genome.fa.gz",
"class": "File"
},
"reference-gc":
{
"path": "https://dcc.icgc.org/api/v1/download?fn=/PCAWG/reference_data/pcawg-delly/hs37d5_1000GP.gc",
"class": "File"
},
"somatic_sv_vcf":
{
"path":"/tmp/delly.somatic.sv.vcf.gz",
"class":"File"
},
"somatic_bedpe":
{
"path":"/tmp/delly.somatic.sv.bedpe.txt",
"class":"File"
},
"cov":
{
"path":"/tmp/delly.sv.cov.tar.gz",
"class":"File"
},
"cov_plots":
{
"path":"/tmp/delly.sv.cov.plots.tar.gz",
"class":"File"
},
"germline_sv_vcf":
{
"path":"/tmp/delly.germline.sv.vcf.gz",
"class":"File"
},
"germline_bedpe":
{
"path":"/tmp/delly.germline.sv.bedpe.txt",
"class":"File"
},
"sv_log":
{
"path":"/tmp/delly.sv.log.tar.gz",
"class":"File"
},
"sv_timing":
{
"path":"/tmp/delly.sv.timing.json",
"class":"File"
},
"sv_qc":
{
"path":"/tmp/delly.sv.qc.json",
"class":"File"
}
}