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Consensus resources for International Human Epigenome Consortium

This page is meant to be a mirror of GRCh38 resources published by EBI, and also maintained at epigenomes.ca

Additionally, other resources on which consensus within IHEC is achieved will be located here for reference to ensure that all data is processed using the same resources.

GRCh38 reference build

The GRCh38 reference build chosen by IHEC is available at:

http://www.epigenomes.ca/data/CEMT/resources/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz http://www.epigenomes.ca/data/CEMT/resources/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.md5sum

and via EBI at:

http://ftp.ebi.ac.uk/pub/databases/blueprint/reference/20150407_reference_files/GRCh38_no_alt_analysis_set.201503031.fa.gz

The NCBI url is: ftp://ftp.ncbi.nlm.nih.gov/genomes/archive/old_genbank/Eukaryotes/vertebrates_mammals/Homo_sapiens/GRCh38/seqs_for_alignment_pipelines/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz

Gene annotations

Pleasse note that the IHEC has moved from v22 to v29 annotations. For original v22 references see: http://www.epigenomes.ca/data/CEMT/resources/index.v22.html

The v29 comprehensive gene annotations are available at:

ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_29/gencode.v29.annotation.gtf.gz

For full details, see: Gencode v29

GRCh38 Blacklist

To be discussed

ENCODE ChIP-Seq resources

ENCODE ChIP-Seq resources tarball