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Extend cell set graphs with (cell) ontology classification. from enrichment #27

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dosumis opened this issue Jul 17, 2023 · 0 comments · Fixed by #24

Closed

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Extend cell set graphs with (cell) ontology classification. from enrichment #27

dosumis opened this issue Jul 17, 2023 · 0 comments · Fixed by #24

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dosumis commented Jul 17, 2023 •

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Extend the cell type RDF graph with:

rdfs:type: consists_of some { CL } to nodes in the cell-set graph that correspond to
A non-redundant subClassOf hierarchy above the classes and relationships added in step 1.

Needed - a general redundancy stripping step - as ubergraph inevitably produces a flattened representation of the subClassOf heirarchy.

dosumis mentioned this issue

Generate graphs of cell sets + cell ontology (enrichment) classes #13

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dosumis assigned ubyndr

ubyndr linked a pull request

that will close this issue

Generate graphs using cell sets as unifying concept #24

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ubyndr closed this as completed in #24

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