Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Record percentage contribution of cells defined by CxG standard obs fields on each cell set #65

Closed
Tracked by #64
dosumis opened this issue Mar 19, 2024 · 1 comment · Fixed by #73
Closed
Tracked by #64

Record percentage contribution of cells defined by CxG standard obs fields on each cell set #65

dosumis opened this issue Mar 19, 2024 · 1 comment · Fixed by #73
Assignees
@ubyndr

Comments

@dosumis
Copy link
Contributor

dosumis commented Mar 19, 2024 •
edited
Loading

Represent this as edges linking cell sets to nodes representing ontology terms used in obs. The edge property should be the obs key. The edge should also include the percentage of cells in the cell set that have the specified property.
@dosumis dosumis mentioned this issue Mar 19, 2024
Closed
2 tasks
@dosumis
Copy link
Contributor Author

dosumis commented Apr 15, 2024

Note - this will require more than just processing co-annotations - we will need to count cells.

@ubyndr ubyndr mentioned this issue May 17, 2024
Merged
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@ubyndr ubyndr

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

Add method to track cell contribution percentages by cxg obs fields INCATools/pandasaurus_cxg
2 participants
@dosumis @ubyndr