SMEM-only implementation? #13
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Hi, We are happy to help, but could you please be a bit more specific about where you run into trouble? The point of MA-EVAL is to produce the evaluations and figures in the "Accurate high throughput alignment via line sweep-based seed processing" manuscript. For your analysis: Sorry for being so vague, Markus |
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Hi MA Team - Markus & Arne,
I'm playing around with your Modular Aligner software. It looks well built, and does have all kinds of flexibilities I'm looking for. However, I may need a bit more documentation to build the command in the python environment. I was trying to follow the MA-EVAL repo, but was also missing explicit examples there.
In particular, I'm hoping to evaluate the difference between just SMEM+SoC/Chaining vs. the full steps 1-3 with dynamic programming.
Could you provide some use case examples or a short guide?
Thanks.
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