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"Error: Names must be unique" in ggwithinplot #396

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XiaoyuZeng opened this issue Mar 17, 2020 · 7 comments
Closed

"Error: Names must be unique" in ggwithinplot #396

XiaoyuZeng opened this issue Mar 17, 2020 · 7 comments

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@XiaoyuZeng
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XiaoyuZeng commented Mar 17, 2020 •
edited

The problem:

I tried to run a function (ggwithinplot) to plot data in ggstatsplot. But it took a long time to run this function, and nothing turned out:

image

So I shut down this function while it was running. I tried waiting. It didn't work. So this problem was not a time issue.

After that, I was wondering whether it was due to that I got a large number of data points (N=2000). So I tried another sample that includes 250 data points. And this time, I got this error: "ERROR: Names must be unique."

ERROR: Names must be unique. Backtrace: 
1. ggstatsplot::ggwithinstats(...) 
27. vctrs:::validate_unique(names = names) 
28. vctrs:::stop_names_must_be_unique(which(duplicated(names))) 
29. vctrs:::stop_names(...) 
30. vctrs:::stop_vctrs(...)

And I checked traceback:

33.stop(fallback)
32.signal_abort(cnd)
31.abort(message, class = c(class, "vctrs_error"), ...)
30.stop_vctrs(message, class = c(class, "vctrs_error_names"), locations = locations, ...)
29.stop_names("Names must be unique.", class = "vctrs_error_names_must_be_unique", locations = locations)
28.stop_names_must_be_unique(which(duplicated(names)))
27.validate_unique(names = names)
26.vctrs::vec_as_names(names, repair = "check_unique")
25.withCallingHandlers(expr, simpleError = function(cnd) { abort(conditionMessage(cnd), parent = cnd) })
24.instrument_base_errors(expr)
23.doTryCatch(return(expr), name, parentenv, handler)
22.tryCatchOne(expr, names, parentenv, handlers[[1L]])
21.tryCatchList(expr, classes, parentenv, handlers)
20.tryCatch(instrument_base_errors(expr), vctrs_error_subscript = function(cnd) { cnd$subscript_action <- subscript_action(type) cnd$subscript_elt <- "column" cnd_signal(cnd) ...
19.with_subscript_errors(vctrs::vec_as_names(names, repair = "check_unique"))
18.rename_impl(NULL, .vars, quo(c(...)), strict = .strict)
17.tidyselect::vars_rename(names(.data), !!!enquos(...))
16.rename.data.frame(.data = ., variable = skim_variable)
15.dplyr::rename(.data = ., variable = skim_variable)
14.function_list[[k]](value)
13.withVisible(function_list[[k]](value))
12.freduce(value, `_function_list`)
11.`_fseq`(`_lhs`)
10.eval(quote(`_fseq`(`_lhs`)), env, env)
9.eval(quote(`_fseq`(`_lhs`)), env, env)
8.withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7.dplyr::left_join(x = df_results %>% dplyr::group_modify(.f = ~tibble::as_tibble(skimr::skim(purrr::keep(.x = ., .p = ..f))), keep = FALSE) %>% dplyr::ungroup(x = .), y = dplyr::tally(df_results), by = purrr::map_chr(.x = grouping.vars, .f = rlang::as_string)) %>% dplyr::mutate(.data = ., n = n - n_missing) %>% purrr::set_names(x = ., ...
6.groupedstats::grouped_summary(data = data, grouping.vars = { { x } ...
5.eval(lhs, parent, parent)
4.eval(lhs, parent, parent)
3.groupedstats::grouped_summary(data = data, grouping.vars = { { x } ...
2.mean_labeller(data = data, x = { { x } ...
1.ggwithinstats(data = emotion_rating_dt_50, x = variable, y = Emotion_rating, point.path = FALSE, mean.path = FALSE, effsize.type = "partial_eta", p.adjust.method = "fdr", ggtheme = theme_classic(), palette = "Darjeeling2", package = "wesanderson", ggstatsplot.layer = FALSE, xlab = "Dilemma types"

What I have tried:

  1. I googled about this error. Did not get much helpful information.
  2. I updated r-base and all r packages. Not worked.
  3. I checked whether this problem was specific to ggwithinplot. And I found ggbetweenplot worked well even in the large sample (N=2000).
  4. I checked whether it was due to problems with the input data, which is required to be long-format. I did not find anything dubious.
  5. I checked whether the names of columns in the data frame duplicated. No. So I was really confused about the meaning of "name must be unique."

(https://stackoverflow.com/questions/60720673/how-to-solve-error-names-must-be-unique-in-r-package-ggstatsplot)

Here comes the reprex:

library("tidyverse")
library("ggstatsplot")
#> Registered S3 methods overwritten by 'broom.mixed':
#>   method         from 
#>   augment.lme    broom
#>   augment.merMod broom
#>   glance.lme     broom
#>   glance.merMod  broom
#>   glance.stanreg broom
#>   tidy.brmsfit   broom
#>   tidy.gamlss    broom
#>   tidy.lme       broom
#>   tidy.merMod    broom
#>   tidy.rjags     broom
#>   tidy.stanfit   broom
#>   tidy.stanreg   broom
#> Registered S3 methods overwritten by 'car':
#>   method                          from
#>   influence.merMod                lme4
#>   cooks.distance.influence.merMod lme4
#>   dfbeta.influence.merMod         lme4
#>   dfbetas.influence.merMod        lme4
library("bruceR")
#> 载入需要的程辑包：rio
#> 载入需要的程辑包：data.table
#> 
#> 载入程辑包：'data.table'
#> The following objects are masked from 'package:dplyr':
#> 
#>     between, first, last
#> The following object is masked from 'package:purrr':
#> 
#>     transpose
#> 载入需要的程辑包：psych
#> 
#> 载入程辑包：'psych'
#> The following objects are masked from 'package:ggplot2':
#> 
#>     %+%, alpha
#> 载入需要的程辑包：lubridate
#> 
#> 载入程辑包：'lubridate'
#> The following objects are masked from 'package:data.table':
#> 
#>     hour, isoweek, mday, minute, month, quarter, second, wday, week,
#>     yday, year
#> The following object is masked from 'package:base':
#> 
#>     date
#> 载入需要的程辑包：performance
#> Registered S3 methods overwritten by 'huge':
#>   method    from   
#>   plot.sim  BDgraph
#>   print.sim BDgraph
#> Registered S3 method overwritten by 'GGally':
#>   method from   
#>   +.gg   ggplot2
#> ========================================================
#> BRoadly Useful Collections and Extensions of R functions
#> ========================================================
#> Loaded packages:
#> <U+2714> bruceR (version 0.4.0)
#> <U+2714> rio, dplyr, data.table, psych, stringr, lubridate, performance, ggplot2
#> Update:
#> devtools::install_github("psychbruce/bruceR")
#> Citation:
#> Bao, H.-W.-S. (2020). bruceR: Broadly useful collections and extensions of R functions (version 0.4.0). Retrieved from https://github.com/psychbruce/bruceR
data <- import("E:/Zengxiaoyu/zxy_projcet/!ncov/data/Covid_Q1Q2data_minus200_0316.xlsx")
#> New names:
#> * hubei -> hubei...1396
data$hubei<-data$hubei...666
data$hubei <- as.factor(data$hubei)
#data frame
emotion_df <- data.frame(data$N1_disself,data$N1_disFAMI,data$N1_disHB,data$hubei)

emotion_df <- as.data.table(emotion_df)

#data preparation for repeated measure

long_emotion_rating_dt<-tidyr::pivot_longer(emotion_df, 1:3,names_to = 'variable', values_to = "Emotion_rating")

emotion_rating_dt_50<-subset(long_emotion_rating_dt,data.hubei=="HuBei")
# to plot
grid::grid.newpage()
ggwithinstats(
  data = emotion_rating_dt_50,
  x = variable, # > 2 groups
  y = Emotion_rating,
  point.path = FALSE,
  mean.path = FALSE,
  effsize.type = 'partial_eta' ,
  p.adjust.method = "fdr",
  ggtheme = theme_classic(),
  palette = "Darjeeling2",
  package = "wesanderson",
  ggstatsplot.layer = FALSE,
  xlab = "Dilemma types", 
  ylab = "Emotion rating(1=appealing,7=appaling)",
  title = "Emotion rating for fout types moral dilemmas"
)
#> Note: 95% CI for effect size estimate was computed with 100 bootstrap samples.
#> 
#> Error: Names must be unique.
Created on 2020-03-17 by the reprex package (v0.3.0)

data frame
image

session info

R version 3.6.3 (2020-02-29)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 15063)

Matrix products: default

locale:
[1] LC_COLLATE=Chinese (Simplified)_China.936  LC_CTYPE=Chinese (Simplified)_China.936   
[3] LC_MONETARY=Chinese (Simplified)_China.936 LC_NUMERIC=C                              
[5] LC_TIME=Chinese (Simplified)_China.936    

attached base packages:
[1] splines   stats4    stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] sessioninfo_1.1.1  reprex_0.3.0       reshape_0.8.8      gginnards_0.0.3    VGAM_1.1-2         parameters_0.6.0  
 [7] nnet_7.3-13        openxlsx_4.1.4     summarytools_0.9.6 ggcorrplot_0.1.3   bruceR_0.4.0       performance_0.4.4 
[13] lubridate_1.7.4    psych_1.9.12.31    data.table_1.12.8  rio_0.5.16         ggstatsplot_0.3.1  forcats_0.5.0     
[19] stringr_1.4.0      dplyr_0.8.5        purrr_0.3.3        readr_1.3.1        tidyr_1.0.2        tibble_2.1.3      
[25] ggplot2_3.3.0      tidyverse_1.3.0    drawMap_0.1.0     

loaded via a namespace (and not attached):
  [1] estimability_1.3          GGally_1.4.0              lavaan_0.6-5              coda_0.19-3              
  [5] acepack_1.4.1             knitr_1.28                multcomp_1.4-12           rpart_4.1-15             
  [9] inline_0.3.15             generics_0.0.2            callr_3.4.2               cowplot_1.0.0            
 [13] TH.data_1.0-10            xml2_1.2.5                httpuv_1.5.2              StanHeaders_2.21.0-1     
 [17] assertthat_0.2.1          d3Network_0.5.2.1         WRS2_1.0-0                xfun_0.12                
 [21] hms_0.5.3                 evaluate_0.14             promises_1.1.0            fansi_0.4.1              
 [25] dbplyr_1.4.2              readxl_1.3.1              igraph_1.2.4.2            htmlwidgets_1.5.1        
 [29] DBI_1.1.0                 Rsolnp_1.16               ellipsis_0.3.0            paletteer_1.1.0          
 [33] rcompanion_2.3.25         backports_1.1.5           pbivnorm_0.6.0            insight_0.8.2            
 [37] rapportools_1.0           libcoin_1.0-5             jmvcore_1.2.5             vctrs_0.2.4              
 [41] sjlabelled_1.1.3          abind_1.4-5               withr_2.1.2               pryr_0.1.4               
 [45] metaBMA_0.6.2             checkmate_2.0.0           bdsmatrix_1.3-4           emmeans_1.4.5            
 [49] fdrtool_1.2.15            prettyunits_1.1.1         fastGHQuad_1.0            mnormt_1.5-6             
 [53] cluster_2.1.0             mi_1.0                    crayon_1.3.4              pkgconfig_2.0.3          
 [57] nlme_3.1-145              statsExpressions_0.3.1    palr_0.2.0                pals_1.6                 
 [61] rlang_0.4.5               lifecycle_0.2.0           miniUI_0.1.1.1            groupedstats_0.2.0       
 [65] skimr_2.1                 LaplacesDemon_16.1.4      MatrixModels_0.4-1        sandwich_2.5-1           
 [69] kutils_1.69               EMT_1.1                   modelr_0.1.6              dichromat_2.0-0          
 [73] tcltk_3.6.3               cellranger_1.1.0          matrixStats_0.56.0        broomExtra_2.5.0         
 [77] lmtest_0.9-37             Matrix_1.2-18             regsem_1.5.2              loo_2.2.0                
 [81] mc2d_0.1-18               carData_3.0-3             boot_1.3-24               zoo_1.8-7                
 [85] base64enc_0.1-3           whisker_0.4               processx_3.4.2            png_0.1-7                
 [89] viridisLite_0.3.0         rjson_0.2.20              oompaBase_3.2.9           pander_0.6.3             
 [93] ggExtra_0.9               afex_0.26-0               multcompView_0.1-8        coin_1.3-1               
 [97] arm_1.10-1                jpeg_0.1-8.1              rockchalk_1.8.144         ggsignif_0.6.0           
[101] scales_1.1.0              magrittr_1.5              plyr_1.8.6                compiler_3.6.3           
[105] rstantools_2.0.0          bbmle_1.0.23.1            RColorBrewer_1.1-2        lme4_1.1-21              
[109] cli_2.0.2                 lmerTest_3.1-1            pbapply_1.4-2             ps_1.3.2                 
[113] TMB_1.7.16                Brobdingnag_1.2-6         htmlTable_1.13.3          Formula_1.2-3            
[117] MASS_7.3-51.5             mgcv_1.8-31               tidyselect_1.0.0          stringi_1.4.6            
[121] lisrelToR_0.1.4           sem_3.1-9                 jtools_2.0.2              OpenMx_2.17.3            
[125] latticeExtra_0.6-29       ggrepel_0.8.2             bridgesampling_1.0-0      grid_3.6.3               
[129] tools_3.6.3               parallel_3.6.3            matrixcalc_1.0-3          rstudioapi_0.11          
[133] foreign_0.8-76            gridExtra_2.3             ipmisc_1.2.0              pairwiseComparisons_0.2.5
[137] BDgraph_2.62              digest_0.6.25             shiny_1.4.0.2             nortest_1.0-4            
[141] jmv_1.2.5                 Rcpp_1.0.3                car_3.0-7                 broom_0.5.5              
[145] metafor_2.1-0             ez_4.4-0                  BayesFactor_0.9.12-4.2    metaplus_0.7-11          
[149] later_1.0.0               httr_1.4.1                effectsize_0.2.0          sjstats_0.17.9           
[153] colorspace_1.4-1          rvest_0.3.5               XML_3.99-0.3              fs_1.3.2                 
[157] truncnorm_1.0-8           rematch2_2.1.0            expm_0.999-4              mapproj_1.2.7            
[161] jcolors_0.0.4             MuMIn_1.43.15             xtable_1.8-4              jsonlite_1.6.1           
[165] nloptr_1.2.2.1            corpcor_1.6.9             rstan_2.19.3              glasso_1.11              
[169] zeallot_0.1.0             modeltools_0.2-23         scico_1.1.0               R6_2.4.1                 
[173] Hmisc_4.3-1               broom.mixed_0.2.4         pillar_1.4.3              htmltools_0.4.0          
[177] mime_0.9                  glue_1.3.2                fastmap_1.0.1             minqa_1.2.4              
[181] codetools_0.2-16          maps_3.3.0                pkgbuild_1.0.6            mvtnorm_1.1-0            
[185] lattice_0.20-40           numDeriv_2016.8-1.1       huge_1.3.4                curl_4.3                 
[189] DescTools_0.99.34         gtools_3.8.1              clipr_0.7.0               magick_2.3               
[193] logspline_2.1.15          zip_2.0.4                 survival_3.1-11           rmarkdown_2.1            
[197] qgraph_1.6.5              repr_1.1.0                munsell_0.5.0             semPlot_1.1.2            
[201] sjmisc_2.8.3              haven_2.2.0               reshape2_1.4.3            gtable_0.3.0             
[205] bayestestR_0.5.2

Any ideas?
@IndrajeetPatil
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Owner

Can you please post output from sessioninfo::sessioninfo()?

@XiaoyuZeng
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Author

Can you please post output from sessioninfo::sessioninfo()?

Updated. Sorry.

@IndrajeetPatil
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Owner

Hmm, strange. I can't seem to find anything amiss about the package versions. They seem to be the same ones I have on my local machine and I don't get any error for the function where you get the error. In your traceback, you can see that the function mean_labeller is where the execution runs into problems.

But it runs just fine, not only on my local machine but also on virtual Travis and AppVeyor machines for both R 3.6 and R 4.0.

library(ggstatsplot)
#> Registered S3 method overwritten by 'broom.mixed':
#>   method      from 
#>   tidy.gamlss broom
#> Registered S3 methods overwritten by 'car':
#>   method                          from
#>   influence.merMod                lme4
#>   cooks.distance.influence.merMod lme4
#>   dfbeta.influence.merMod         lme4
#>   dfbetas.influence.merMod        lme4

ggstatsplot:::mean_labeller(data = mtcars, am, wt)
#> # A tibble: 2 x 4
#>   am       wt label                               n_label      
#>   <fct> <dbl> <chr>                               <chr>        
#> 1 0      3.77 list(~italic(widehat(mu))== 3.769 ) "0\n(n = 19)"
#> 2 1      2.41 list(~italic(widehat(mu))== 2.411 ) "1\n(n = 13)"

Created on 2020-03-17 by the reprex package (v0.3.0)

Session info 
devtools::session_info()
#> - Session info ---------------------------------------------------------------
#>  setting  value                                             
#>  version  R Under development (unstable) (2020-02-28 r77874)
#>  os       Windows 10 x64                                    
#>  system   x86_64, mingw32                                   
#>  ui       RTerm                                             
#>  language (EN)                                              
#>  collate  English_United States.1252                        
#>  ctype    English_United States.1252                        
#>  tz       Europe/Berlin                                     
#>  date     2020-03-17                                        
#> 
#> - Packages -------------------------------------------------------------------
#>  ! package             * version    date       lib
#>    abind                 1.4-5      2016-07-21 [1]
#>    assertthat            0.2.1      2019-03-21 [1]
#>    backports             1.1.5      2019-10-02 [1]
#>    base64enc             0.1-3      2015-07-28 [1]
#>    BayesFactor           0.9.12-4.2 2018-05-19 [1]
#>    bayestestR            0.5.2.1    2020-03-16 [1]
#>    bbmle                 1.0.23.1   2020-02-03 [1]
#>    bdsmatrix             1.3-4      2020-01-13 [1]
#>    boot                  1.3-24     2019-12-20 [2]
#>    bridgesampling        1.0-0      2020-02-26 [1]
#>    Brobdingnag           1.2-6      2018-08-13 [1]
#>    broom                 0.5.3.9000 2020-03-01 [1]
#>    broom.mixed           0.2.4.9000 2020-03-09 [1]
#>    broomExtra            2.0.0.9000 2020-03-11 [1]
#>    callr                 3.4.2      2020-02-12 [1]
#>    car                   3.0-7      2020-03-11 [1]
#>    carData               3.0-3      2019-11-16 [1]
#>    cellranger            1.1.0      2016-07-27 [1]
#>    cli                   2.0.2      2020-02-28 [1]
#>    cluster               2.1.0      2019-06-19 [2]
#>    coda                  0.19-3     2019-07-05 [1]
#>    codetools             0.2-16     2018-12-24 [2]
#>    coin                  1.3-1      2019-08-28 [1]
#>    colorspace            1.4-1      2019-03-18 [1]
#>    cowplot               1.0.0      2019-07-11 [1]
#>    crayon                1.3.4      2017-09-16 [1]
#>    curl                  4.3        2019-12-02 [1]
#>    data.table            1.12.8     2019-12-09 [1]
#>    desc                  1.2.0      2018-05-01 [1]
#>    DescTools             0.99.34    2020-03-12 [1]
#>    devtools              2.2.2      2020-02-17 [1]
#>    dichromat             2.0-0      2013-01-24 [1]
#>    digest                0.6.25     2020-02-23 [1]
#>    dplyr                 0.8.5      2020-03-07 [1]
#>    effectsize            0.2.0.1    2020-03-06 [1]
#>    ellipsis              0.3.0      2019-09-20 [1]
#>    emmeans               1.4.5      2020-03-04 [1]
#>    EMT                   1.1        2013-01-29 [1]
#>    estimability          1.3        2018-02-11 [1]
#>    evaluate              0.14       2019-05-28 [1]
#>    expm                  0.999-4    2019-03-21 [1]
#>    ez                    4.4-0      2016-11-02 [1]
#>    fansi                 0.4.1      2020-01-08 [1]
#>    fastGHQuad            1.0        2018-09-30 [1]
#>    fastmap               1.0.1      2019-10-08 [1]
#>    forcats               0.5.0      2020-03-01 [1]
#>    foreign               0.8-75     2020-01-20 [2]
#>    fs                    1.3.2      2020-03-05 [1]
#>    generics              0.0.2      2018-11-29 [1]
#>    ggcorrplot            0.1.3      2019-05-19 [1]
#>    ggExtra               0.9        2019-08-27 [1]
#>    ggplot2               3.3.0      2020-03-05 [1]
#>    ggrepel               0.8.2      2020-03-08 [1]
#>    ggsignif              0.6.0      2019-08-08 [1]
#>    ggstatsplot         * 0.3.1.9000 2020-03-11 [1]
#>    glue                  1.3.2      2020-03-12 [1]
#>    gridExtra             2.3        2017-09-09 [1]
#>    groupedstats          0.2.0      2020-02-28 [1]
#>    gtable                0.3.0      2019-03-25 [1]
#>    gtools                3.8.1      2018-06-26 [1]
#>    haven                 2.2.0      2019-11-08 [1]
#>    highr                 0.8        2019-03-20 [1]
#>    hms                   0.5.3      2020-01-08 [1]
#>    htmltools             0.4.0      2019-10-04 [1]
#>    httpuv                1.5.2      2019-09-11 [1]
#>    inline                0.3.15     2018-05-18 [1]
#>    insight               0.8.2.1    2020-03-16 [1]
#>    ipmisc                1.2.0.9000 2020-03-05 [1]
#>    jcolors               0.0.4      2019-05-22 [1]
#>    jmv                   1.2.5      2020-02-17 [1]
#>    jmvcore               1.2.5      2020-02-05 [1]
#>    jsonlite              1.6.1      2020-02-02 [1]
#>    knitr                 1.28       2020-02-06 [1]
#>    LaplacesDemon         16.1.4     2020-02-06 [1]
#>    later                 1.0.0      2019-10-04 [1]
#>    lattice               0.20-40    2020-02-19 [2]
#>    libcoin               1.0-5      2019-08-27 [1]
#>    lifecycle             0.2.0.9000 2020-03-16 [1]
#>    lme4                  1.1-21     2019-03-05 [1]
#>    lmtest                0.9-37     2019-04-30 [1]
#>    logspline             2.1.15     2019-11-08 [1]
#>    loo                   2.2.0      2019-12-19 [1]
#>    magrittr              1.5        2014-11-22 [1]
#>    mapproj               1.2.7      2020-02-03 [1]
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#> [1] C:/Users/inp099/Documents/R/win-library/4.0
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#> 
#>  D -- DLL MD5 mismatch, broken installation.

What do you get if you run the following?

ggstatsplot:::mean_labeller(data = mtcars, am, wt)

@XiaoyuZeng
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Hmm, strange. I can't seem to find anything amiss about the package versions. They seem to be the same ones I have on my local machine and I don't get any error for the function where you get the error. In your traceback, you can see that the function mean_labeller is where the execution runs into problems.

But it runs just fine, not only on my local machine but also on virtual Travis and AppVeyor machines for both R 3.6 and R 4.0.

library(ggstatsplot)
#> Registered S3 method overwritten by 'broom.mixed':
#>   method      from 
#>   tidy.gamlss broom
#> Registered S3 methods overwritten by 'car':
#>   method                          from
#>   influence.merMod                lme4
#>   cooks.distance.influence.merMod lme4
#>   dfbeta.influence.merMod         lme4
#>   dfbetas.influence.merMod        lme4

ggstatsplot:::mean_labeller(data = mtcars, am, wt)
#> # A tibble: 2 x 4
#>   am       wt label                               n_label      
#>   <fct> <dbl> <chr>                               <chr>        
#> 1 0      3.77 list(~italic(widehat(mu))== 3.769 ) "0\n(n = 19)"
#> 2 1      2.41 list(~italic(widehat(mu))== 2.411 ) "1\n(n = 13)"

Created on 2020-03-17 by the reprex package (v0.3.0)

Session info
What do you get if you run the following?

ggstatsplot:::mean_labeller(data = mtcars, am, wt)

It runs just fine.

ggstatsplot:::mean_labeller(data = mtcars, am, wt)
#> Registered S3 methods overwritten by 'broom.mixed':
#>   method         from 
#>   augment.lme    broom
#>   augment.merMod broom
#>   glance.lme     broom
#>   glance.merMod  broom
#>   glance.stanreg broom
#>   tidy.brmsfit   broom
#>   tidy.gamlss    broom
#>   tidy.lme       broom
#>   tidy.merMod    broom
#>   tidy.rjags     broom
#>   tidy.stanfit   broom
#>   tidy.stanreg   broom
#> Registered S3 methods overwritten by 'car':
#>   method                          from
#>   influence.merMod                lme4
#>   cooks.distance.influence.merMod lme4
#>   dfbeta.influence.merMod         lme4
#>   dfbetas.influence.merMod        lme4
#> # A tibble: 2 x 4
#>   am       wt label                               n_label      
#>   <fct> <dbl> <chr>                               <chr>        
#> 1 0      3.77 list(~italic(widehat(mu))== 3.769 ) "0\n(n = 19)"
#> 2 1      2.41 list(~italic(widehat(mu))== 2.411 ) "1\n(n = 13)"
Created on 2020-03-17 by the reprex package (v0.3.0)

@IndrajeetPatil
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So this seems to have something to do with your data and I can't diagnose that without a self-contained reprex.

Your original reprex points to data on your local machine:
data <- import("E:/Zengxiaoyu/zxy_projcet/!ncov/data/Covid_Q1Q2data_minus200_0316.xlsx")

@XiaoyuZeng
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XiaoyuZeng commented Mar 17, 2020 •
edited

Thanks, Indrajeet. Thanks for the feedback. And thank you for guiding me to make the problem clearer.

I made another reprex with minimal data. Error remains.

library("tidyverse")
library("ggstatsplot")
#> Registered S3 methods overwritten by 'broom.mixed':
#>   method         from 
#>   augment.lme    broom
#>   augment.merMod broom
#>   glance.lme     broom
#>   glance.merMod  broom
#>   glance.stanreg broom
#>   tidy.brmsfit   broom
#>   tidy.gamlss    broom
#>   tidy.lme       broom
#>   tidy.merMod    broom
#>   tidy.rjags     broom
#>   tidy.stanfit   broom
#>   tidy.stanreg   broom
#> Registered S3 methods overwritten by 'car':
#>   method                          from
#>   influence.merMod                lme4
#>   cooks.distance.influence.merMod lme4
#>   dfbeta.influence.merMod         lme4
#>   dfbetas.influence.merMod        lme4
df <- read.table(
  header = TRUE,
  text = "  hubei self other province
1 HuBei    7    10        5
2 HuBei    2     0        0
3 HuBei    0     0      -22
4 HuBei    2     2        9
5 HuBei   11    -1       -4
6 HuBei    0     0        3
"
)

long_df <- tidyr::pivot_longer(df, 2:4, names_to = "variable", values_to = "Emotion_rating")
ggwithinstats(
  data = long_df,
  x = variable, # > 2 groups
  y = Emotion_rating,
  point.path = FALSE
)
#> Note: 95% CI for effect size estimate was computed with 100 bootstrap samples.
#> 
#> Error: Names must be unique.
Created on 2020-03-18 by the reprex package (v0.3.0)

@IndrajeetPatil
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Thanks a lot! I can reproduce this. This actually seems to trace to groupedstats package, so I will move the issue there: IndrajeetPatil/groupedstats#24

@IndrajeetPatil IndrajeetPatil mentioned this issue Mar 17, 2020
Closed
@tzengji tzengji mentioned this issue May 12, 2020
Closed
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