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ENH: Update CI for ITK 5.3.0
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@thewtex
thewtex committed Dec 21, 2022
1 parent cc8c960 commit 944886a
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281 changes: 6 additions & 275 deletions .github/workflows/build-test-package.yml
View file
Expand Up @@ -3,279 +3,10 @@ name: Build, test, package
on: [push,pull_request]

jobs:
build-test-cxx:
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 3
matrix:
os: [ubuntu-18.04, windows-2019, macos-10.15]
include:
- os: ubuntu-18.04
c-compiler: "gcc"
cxx-compiler: "g++"
itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
cmake-build-type: "MinSizeRel"
- os: windows-2019
c-compiler: "cl.exe"
cxx-compiler: "cl.exe"
itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
cmake-build-type: "Release"
- os: macos-10.15
c-compiler: "clang"
cxx-compiler: "clang++"
itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
cmake-build-type: "MinSizeRel"
cxx-build-workflow:
uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-cxx.yml@36e33ec40332bb8fd85bfcd3ee899f82aa108e79

steps:
- uses: actions/checkout@v1

- name: Set up Python 3.8
uses: actions/setup-python@v2
with:
python-version: 3.8

- name: Install build dependencies
run: |
python -m pip install --upgrade pip
python -m pip install ninja
- name: Get specific version of CMake, Ninja
uses: lukka/get-cmake@v3.18.3

- name: Download ITK
run: |
cd ..
git clone https://github.com/InsightSoftwareConsortium/ITK.git
cd ITK
git checkout ${{ matrix.itk-git-tag }}
- name: Build ITK
if: matrix.os != 'windows-2019'
run: |
cd ..
mkdir ITK-build
cd ITK-build
cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK
ninja
- name: Build ITK
if: matrix.os == 'windows-2019'
run: |
cd ..
mkdir ITK-build
cd ITK-build
call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK
ninja
shell: cmd

- name: Fetch CTest driver script
run: |
curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O
- name: Configure CTest script
shell: bash
run: |
operating_system="${{ matrix.os }}"
cat > dashboard.cmake << EOF
set(CTEST_SITE "GitHubActions")
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/" CTEST_SOURCE_DIRECTORY)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../build" CTEST_BINARY_DIRECTORY)
set(dashboard_source_name "${GITHUB_REPOSITORY}")
if(ENV{GITHUB_REF} MATCHES "master")
set(branch "-master")
set(dashboard_model "Continuous")
else()
set(branch "-${GITHUB_REF}")
set(dashboard_model "Experimental")
endif()
set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}")
set(CTEST_UPDATE_VERSION_ONLY 1)
set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL})
set(CTEST_BUILD_CONFIGURATION "Release")
set(CTEST_CMAKE_GENERATOR "Ninja")
set(CTEST_CUSTOM_WARNING_EXCEPTION
\${CTEST_CUSTOM_WARNING_EXCEPTION}
# macOS Azure VM Warning
"ld: warning: text-based stub file"
)
set(dashboard_no_clean 1)
set(ENV{CC} ${{ matrix.c-compiler }})
set(ENV{CXX} ${{ matrix.cxx-compiler }})
if(WIN32)
set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}")
endif()
set(dashboard_cache "
ITK_DIR:PATH=\${CTEST_DASHBOARD_ROOT}/ITK-build
BUILD_TESTING:BOOL=ON
")
string(TIMESTAMP build_date "%Y-%m-%d")
message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}")
message("CTEST_SITE = \${CTEST_SITE}")
include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake)
EOF
cat dashboard.cmake
- name: Build and test
if: matrix.os != 'windows-2019'
run: |
ctest --output-on-failure -j 2 -V -S dashboard.cmake
- name: Build and test
if: matrix.os == 'windows-2019'
run: |
call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
ctest --output-on-failure -j 2 -V -S dashboard.cmake
shell: cmd

build-linux-python-packages:
runs-on: ubuntu-20.04
strategy:
max-parallel: 2
matrix:
python-version: [37, 38, 39, 310]
include:
- itk-python-git-tag: "v5.3rc04"

steps:
- uses: actions/checkout@v2

- name: 'Free up disk space'
run: |
# Workaround for https://github.com/actions/virtual-environments/issues/709
df -h
sudo apt-get clean
sudo rm -rf "/usr/local/share/boost"
sudo rm -rf "$AGENT_TOOLSDIRECTORY"
df -h
- name: 'Fetch build script'
run: |
curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/dockcross-manylinux-download-cache-and-build-module-wheels.sh -O
chmod u+x dockcross-manylinux-download-cache-and-build-module-wheels.sh
- name: 'Build 🐍 Python 📦 package'
run: |
export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
./dockcross-manylinux-download-cache-and-build-module-wheels.sh cp${{ matrix.python-version }}
- name: Publish Python package as GitHub Artifact
uses: actions/upload-artifact@v1
with:
name: LinuxWheel${{ matrix.python-version }}
path: dist

build-macos-python-packages:
runs-on: macos-10.15
strategy:
max-parallel: 2
matrix:
include:
- itk-python-git-tag: "v5.3rc04"

steps:
- uses: actions/checkout@v2

- name: 'Specific XCode version'
run: |
sudo xcode-select -s "/Applications/Xcode_11.7.app"
- name: Get specific version of CMake, Ninja
uses: lukka/get-cmake@v3.18.3

- name: 'Fetch build script'
run: |
curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/macpython-download-cache-and-build-module-wheels.sh -O
chmod u+x macpython-download-cache-and-build-module-wheels.sh
- name: 'Build 🐍 Python 📦 package'
run: |
export ITK_PACKAGE_VERSION=${{ matrix.itk-python-git-tag }}
export MACOSX_DEPLOYMENT_TARGET=10.9
./macpython-download-cache-and-build-module-wheels.sh
- name: Publish Python package as GitHub Artifact
uses: actions/upload-artifact@v1
with:
name: MacOSWheels
path: dist

build-windows-python-packages:
runs-on: windows-2019
strategy:
max-parallel: 2
matrix:
python-version-minor: [7, 8, 9, 10]
include:
- itk-python-git-tag: "v5.3rc04"

steps:
- name: Get specific version of CMake, Ninja
uses: lukka/get-cmake@v3.18.3

- uses: actions/checkout@v2
with:
path: "im"

- name: 'Install Python'
run: |
$pythonArch = "64"
$pythonVersion = "3.${{ matrix.python-version-minor }}"
iex ((new-object net.webclient).DownloadString('https://raw.githubusercontent.com/scikit-build/scikit-ci-addons/master/windows/install-python.ps1'))
- name: 'Fetch build dependencies'
shell: bash
run: |
mv im ../../
cd ../../im
curl -L "https://github.com/InsightSoftwareConsortium/ITKPythonBuilds/releases/download/${{ matrix.itk-python-git-tag }}/ITKPythonBuilds-windows.zip" -o "ITKPythonBuilds-windows.zip"
7z x ITKPythonBuilds-windows.zip -o/c/P -aoa -r
curl -L "https://data.kitware.com/api/v1/file/5c0ad59d8d777f2179dd3e9c/download" -o "doxygen-1.8.11.windows.bin.zip"
7z x doxygen-1.8.11.windows.bin.zip -o/c/P/doxygen -aoa -r
curl -L "https://data.kitware.com/api/v1/file/5bbf87ba8d777f06b91f27d6/download/grep-win.zip" -o "grep-win.zip"
7z x grep-win.zip -o/c/P/grep -aoa -r
- name: 'Build 🐍 Python 📦 package'
shell: cmd
run: |
cd ../../im
call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
set PATH=C:\P\grep;%PATH%
set CC=cl.exe
set CXX=cl.exe
C:\Python3${{ matrix.python-version-minor }}-x64\python.exe C:\P\IPP\scripts\windows_build_module_wheels.py --py-envs "3${{ matrix.python-version-minor }}-x64" --no-cleanup
- name: Publish Python package as GitHub Artifact
uses: actions/upload-artifact@v1
with:
name: WindowsWheel3.${{ matrix.python-version-minor }}
path: ../../im/dist

publish-python-packages-to-pypi:
needs:
- build-linux-python-packages
- build-macos-python-packages
- build-windows-python-packages
runs-on: ubuntu-18.04

steps:
- name: Download Python Packages
uses: actions/download-artifact@v2

- name: Prepare packages for upload
run: |
ls -R
for d in */; do
mv ${d}/*.whl .
done
mkdir dist
mv *.whl dist/
ls dist
- name: Publish 🐍 Python 📦 package to PyPI
if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
uses: pypa/gh-action-pypi-publish@master
with:
user: __token__
password: ${{ secrets.pypi_password }}
python-build-workflow:
uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-package-python.yml@36e33ec40332bb8fd85bfcd3ee899f82aa108e79
secrets:
pypi_password: ${{ secrets.pypi_password }}
4 changes: 2 additions & 2 deletions setup.py
View file
Expand Up @@ -13,7 +13,7 @@

setup(
name='itk-thickness3d',
version='5.2.0',
version='5.3.0',
author='Insight Software Consortium',
author_email='itk+community@discourse.itk.org',
packages=['itk'],
Expand Down Expand Up @@ -44,6 +44,6 @@
keywords='ITK InsightToolkit',
url=r'https://itk.org/',
install_requires=[
r'itk>=5.2.0.post3'
r'itk>=5.3.0'
]
)

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