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feat(itk-dicom): Node.js bundling and interface
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,28 @@ | ||
| import { nodeResolve } from '@rollup/plugin-node-resolve' | ||
| import typescript from '@rollup/plugin-typescript' | ||
| import commonjs from '@rollup/plugin-commonjs' | ||
| import json from '@rollup/plugin-json' | ||
| import { terser } from 'rollup-plugin-terser' | ||
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| export default { | ||
| input: './src/indexNode.ts', | ||
| output: [ | ||
| { | ||
| file: './dist/itk-dicom.node.js', | ||
| format: 'es', | ||
| sourcemap: true, | ||
| plugins: [terser(),], | ||
| }, | ||
| ], | ||
| plugins: [ | ||
| commonjs({ | ||
| transformMixedEsModules: true | ||
| }), | ||
| nodeResolve({ | ||
| preferBuiltins: true, | ||
| browser: false, | ||
| }), | ||
| typescript(), | ||
| json(), | ||
| ], | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| interface StructuredReportToTextNodeResult { | ||
| /** Output text file */ | ||
| outputText: string | ||
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| } | ||
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| export default StructuredReportToTextNodeResult |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,10 @@ | ||
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| import StructuredReportToTextNodeResult from './StructuredReportToTextNodeResult.js' | ||
| export type { StructuredReportToTextNodeResult } | ||
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| import StructuredReportToTextOptions from './StructuredReportToTextOptions.js' | ||
| export type { StructuredReportToTextOptions } | ||
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| import structuredReportToTextNode from './structuredReportToTextNode.js' | ||
| export { structuredReportToTextNode } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,107 @@ | ||
| import { | ||
| TextStream, | ||
| InterfaceTypes, | ||
| runPipelineNode | ||
| } from 'itk-wasm' | ||
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| import StructuredReportToTextOptions from './StructuredReportToTextOptions.js' | ||
| import StructuredReportToTextNodeResult from './StructuredReportToTextNodeResult.js' | ||
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| import path from 'path' | ||
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| /** | ||
| * Read a DICOM structured report file and generate a plain text representation | ||
| * | ||
| * @param {Uint8Array} dicomFile - Input DICOM file | ||
| * | ||
| * @returns {Promise<StructuredReportToTextNodeResult>} - result object | ||
| */ | ||
| async function structuredReportToTextNode( dicomFile: Uint8Array, | ||
| options: StructuredReportToTextOptions = {}) | ||
| : Promise<StructuredReportToTextNodeResult> { | ||
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| const desiredOutputs = [ | ||
| { type: InterfaceTypes.TextStream }, | ||
| ] | ||
| const inputs = [ | ||
| { type: InterfaceTypes.BinaryFile, data: { data: dicomFile, path: "file0" } }, | ||
| ] | ||
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| const args = [] | ||
| // Inputs | ||
| args.push('file0') | ||
| // Outputs | ||
| args.push('0') | ||
| // Options | ||
| args.push('--memory-io') | ||
| if (options.unknownRelationship) { | ||
| args.push('--unknown-relationship') | ||
| } | ||
| if (options.invalidItemValue) { | ||
| args.push('--invalid-item-value') | ||
| } | ||
| if (options.ignoreConstraints) { | ||
| args.push('--ignore-constraints') | ||
| } | ||
| if (options.ignoreItemErrors) { | ||
| args.push('--ignore-item-errors') | ||
| } | ||
| if (options.skipInvalidItems) { | ||
| args.push('--skip-invalid-items') | ||
| } | ||
| if (options.noDocumentHeader) { | ||
| args.push('--no-document-header') | ||
| } | ||
| if (options.numberNestedItems) { | ||
| args.push('--number-nested-items') | ||
| } | ||
| if (options.shortenLongValues) { | ||
| args.push('--shorten-long-values') | ||
| } | ||
| if (options.printInstanceUid) { | ||
| args.push('--print-instance-uid') | ||
| } | ||
| if (options.printSopclassShort) { | ||
| args.push('--print-sopclass-short') | ||
| } | ||
| if (options.printSopclassLong) { | ||
| args.push('--print-sopclass-long') | ||
| } | ||
| if (options.printSopclassUid) { | ||
| args.push('--print-sopclass-uid') | ||
| } | ||
| if (options.printAllCodes) { | ||
| args.push('--print-all-codes') | ||
| } | ||
| if (options.printInvalidCodes) { | ||
| args.push('--print-invalid-codes') | ||
| } | ||
| if (options.printTemplateId) { | ||
| args.push('--print-template-id') | ||
| } | ||
| if (options.indicateEnhanced) { | ||
| args.push('--indicate-enhanced') | ||
| } | ||
| if (options.printColor) { | ||
| args.push('--print-color') | ||
| } | ||
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| const pipelinePath = path.join(path.dirname(import.meta.url.substring(7)), 'pipelines', 'structured-report-to-text') | ||
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| const { | ||
| returnValue, | ||
| stderr, | ||
| outputs | ||
| } = await runPipelineNode(pipelinePath, args, desiredOutputs, inputs) | ||
| if (returnValue !== 0) { | ||
| throw new Error(stderr) | ||
| } | ||
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| const result = { | ||
| outputText: (outputs[0].data as TextStream).data, | ||
| } | ||
| return result | ||
| } | ||
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| export default structuredReportToTextNode |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,20 @@ | ||
| import fs from 'fs' | ||
| import test from 'ava' | ||
| import { structuredReportToTextNode } from '../dist/itk-dicom.node.js' | ||
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| test('structuredReportToText', async t => { | ||
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| const fileName = '88.33-comprehensive-SR.dcm' | ||
| const testFilePath = `../../build-emscripten/ExternalData/test/Input/${fileName}` | ||
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| const dicomFileBuffer = fs.readFileSync(testFilePath) | ||
| const dicomFile = new Uint8Array(dicomFileBuffer) | ||
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| const { outputText } = await structuredReportToTextNode(dicomFile) | ||
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| t.assert(outputText.includes('Comprehensive SR Document')) | ||
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| const { outputText: outputTextNoHeader } = await structuredReportToTextNode(dicomFile, { noDocumentHeader: true }) | ||
| t.assert(!outputTextNoHeader.includes('Comprehensive SR Document')) | ||
| t.assert(outputTextNoHeader.includes('Breast Imaging Report')) | ||
| }) |
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