Merge 83d9300 into 5b91644

hpat/datatypes/hpat_pandas_series_functions.py

@@ -256,6 +256,86 @@ def hpat_pandas_series_values_impl(self):
     return hpat_pandas_series_values_impl
 
 
+@overload_method(SeriesType, 'var')
+def hpat_pandas_series_var(self, axis=None, skipna=None, level=None, ddof=1, numeric_only=None):
+    """
+    Pandas Series method :meth:`pandas.Series.var` implementation.
+
+    .. only:: developer
+       Test: python -m hpat.runtests hpat.tests.test_series.TestSeries.test_series_var
+       Test: python -m hpat.runtests hpat.tests.test_series.TestSeries.test_series_var_unboxing
+       Test: python -m hpat.runtests hpat.tests.test_series.TestSeries.test_series_var_str
+       Test: python -m hpat.runtests hpat.tests.test_series.TestSeries.test_series_var_unsupported_params
+
+    Parameters
+    ----------
+    self: :obj:`pandas.Series`
+        input series
+    axis: :obj:`int`, :obj:`str`
+        Axis along which the operation acts
+        0/None/'index' - row-wise operation
+        1/'columns'    - column-wise operation
+        *unsupported*
+    skipna: :obj:`bool`
+        exclude NA/null values
+    level: :obj:`int`, :obj:`str`
+        If the axis is a MultiIndex (hierarchical),
+        count along a particular level, collapsing into a scalar
+        *unsupported*
+    ddof: :obj:`int`
+        Delta Degrees of Freedom.
+        The divisor used in calculations is N - ddof,
+        where N represents the number of elements.
+    numeric_only: :obj:`bool`
+        Include only float, int, boolean columns.
+        If None, will attempt to use everything, then use only numeric data.
+        Not implemented for Series.
+        *unsupported*
+
+    Returns
+    -------
+    :obj:`scalar`
+         returns :obj:`scalar`
+    """
+
+    _func_name = 'Method var().'
+
+    if not isinstance(self, SeriesType):
+        raise TypingError('{} The object must be a pandas.series. Given: {}'.format(_func_name, self))
+
+    if not isinstance(self.data.dtype, types.Number):
+        msg = '{} The object must be a number. Given self.data.dtype: {}'
+        raise TypingError(msg.format(_func_name, self.data.dtype))
+
+    if not isinstance(skipna, (types.Omitted, types.Boolean, types.NoneType)) and skipna is not None:
+        raise TypingError('{} The object must be a boolean. Given skipna: {}'.format(_func_name, skipna))
+
+    if not isinstance(ddof, (types.Omitted, int, types.Integer)):
+        raise TypingError('{} The object must be an integer. Given ddof: {}'.format(_func_name, ddof))
+
+    for name, arg in [('axis', axis), ('level', level), ('numeric_only', numeric_only)]:
+        if not isinstance(arg, (types.Omitted, types.NoneType)) and arg is not None:
+            raise TypingError('{} Unsupported parameters. Given {}: {}'.format(_func_name, name, arg))
+
+    def hpat_pandas_series_var_impl(self, axis=None, skipna=None, level=None, ddof=1, numeric_only=None):
+        if skipna is None:
+            skipna = True
+
+        if skipna:
+            valuable_length = len(self._data) - numpy.sum(numpy.isnan(self._data))
+            if valuable_length <= ddof:
+                return numpy.nan
+
+            return numpy.nanvar(self._data) * valuable_length / (valuable_length - ddof)
+
+        if len(self._data) <= ddof:
+            return numpy.nan
+
+        return self._data.var() * len(self._data) / (len(self._data) - ddof)
+
+    return hpat_pandas_series_var_impl
+
+
 @overload_attribute(SeriesType, 'index')
 def hpat_pandas_series_index(self):
     """

hpat/hiframes/pd_series_ext.py

@@ -992,7 +992,7 @@ def generic_expand_cumulative_series(self, args, kws):
 
 # TODO: add itemsize, strides, etc. when removed from Pandas
 _not_series_array_attrs = ['flat', 'ctypes', 'itemset', 'reshape', 'sort', 'flatten',
-                           'resolve_cumsum',
+                           'resolve_cumsum', 'resolve_var',
                            'resolve_shift', 'resolve_sum', 'resolve_copy', 'resolve_mean',
                            'resolve_take', 'resolve_max', 'resolve_min', 'resolve_nunique',
                            'resolve_prod', 'resolve_count', 'resolve_dropna']

hpat/tests/test_series.py

@@ -2911,6 +2911,68 @@ def test_series_nunique_param1_impl(S, dropna):
                     result_param1 = hpat_func_param1(S, param1)
                     self.assertEqual(result_param1, result_param1_ref)
 
+    def test_series_var(self):
+        def pyfunc():
+            series = pd.Series([1.0, np.nan, -1.0, 0.0, 5e-324])
+            return series.var()
+
+        cfunc = hpat.jit(pyfunc)
+        np.testing.assert_equal(pyfunc(), cfunc())
+
+    def test_series_var_unboxing(self):
+        def pyfunc(series):
+            return series.var()
+
+        cfunc = hpat.jit(pyfunc)
+        for data in test_global_input_data_numeric + [[]]:
+            series = pd.Series(data)
+            np.testing.assert_equal(pyfunc(series), cfunc(series))
+
+    @unittest.skipIf(hpat.config.config_pipeline_hpat_default,
+                     'Series.var() parameters "ddof" and "skipna" unsupported')
+    def test_series_var_full(self):
+        def pyfunc(series, skipna, ddof):
+            return series.var(skipna=skipna, ddof=ddof)
+
+        cfunc = hpat.jit(pyfunc)
+        for data in test_global_input_data_numeric + [[]]:
+            series = pd.Series(data)
+            for ddof in [0, 1]:
+                for skipna in [True, False]:
+                    ref_result = pyfunc(series, skipna=skipna, ddof=ddof)
+                    result = cfunc(series, skipna=skipna, ddof=ddof)
+                    np.testing.assert_equal(ref_result, result)
+
+    def test_series_var_str(self):
+        def pyfunc(series):
+            return series.var()
+
+        cfunc = hpat.jit(pyfunc)
+        series = pd.Series(test_global_input_data_unicode_kind4)
+        with self.assertRaises(TypingError) as raises:
+            cfunc(series)
+        msg = 'Method var(). The object must be a number. Given self.data.dtype: {}'
+        self.assertIn(msg.format(types.unicode_type), str(raises.exception))
+
+    def test_series_var_unsupported_params(self):
+        def pyfunc(series, axis, level, numeric_only):
+            return series.var(axis=axis, level=level, numeric_only=numeric_only)
+
+        cfunc = hpat.jit(pyfunc)
+        series = pd.Series(test_global_input_data_float64[0])
+        msg = 'Method var(). Unsupported parameters. Given {}: {}'
+        with self.assertRaises(TypingError) as raises:
+            cfunc(series, axis=1, level=None, numeric_only=None)
+        self.assertIn(msg.format('axis', 'int'), str(raises.exception))
+
+        with self.assertRaises(TypingError) as raises:
+            cfunc(series, axis=None, level=1, numeric_only=None)
+        self.assertIn(msg.format('level', 'int'), str(raises.exception))
+
+        with self.assertRaises(TypingError) as raises:
+            cfunc(series, axis=None, level=None, numeric_only=True)
+        self.assertIn(msg.format('numeric_only', 'bool'), str(raises.exception))
+
     def test_series_count(self):
         def test_series_count_impl(S):
             return S.count()