ci-fenics.yml

name: FEniCS

on:
  push:
    branches:
      - master
  pull_request:

jobs:

  test:
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v2
        with:
          fetch-depth: 1

      - name: Setup Miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          auto-update-conda: true
          python-version: 3.8
          mamba-version: "*"
          channels: conda-forge,defaults
          channel-priority: true

      - name: Conda info
        shell: bash -l {0}
        run: |
          conda info
          which python

      - name: Mamba install FEniCS
        shell: bash -l {0}
        run: |
          conda config --set always_yes yes
          conda config --add channels conda-forge
          mamba create -n fenicsproject -c conda-forge fenics
          conda activate fenicsproject
          which python
          python -c "from dolfin import *"

      - name: Install dependencies
        shell: bash -l {0}
        run: |
          conda activate fenicsproject
          python -m pip install --upgrade pip
          python -m pip install git+https://github.com/dolfin-adjoint/pyadjoint.git@master
          python -m pip install git+https://github.com/IvanYashchuk/fecr@master
          python -m pip install pytest
          python -m pip install pytest-cov
          python -m pip install pytest-check
          python -m pip install coveralls
          python -m pip install fdm
          python -m pip install --upgrade jax jaxlib

      - name: Install JAX-FEniCS
        shell: bash -l {0}
        run: |
          conda activate fenicsproject
          python -m pip install .

      - name: Print path
        shell: bash -l {0}
        run: python -c "import sys; print('\n'.join(sys.path))"

      - name: Test with pytest
        shell: bash -l {0}
        run: |
          conda activate fenicsproject
          python -c "import sys; print('\n'.join(sys.path))"
          python -m pytest --cov=jaxfenics_adjoint --cov-config=tests/.coveragerc tests/fenics -vvv

      - name: Send coveralls
        shell: bash -l {0}
        env:
          COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
        run: |
          conda activate fenicsproject
          coveralls