autosave manager is triggering UI changes from a non UI Thread - exceptions #6347
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Now I want to save everything and restart jabref - and get this Log Fileorg.jabref.logic.exporter.SaveException: Problems saving: at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.saveDatabase(Unknown Source) at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source) at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source) at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source) at org.jabref/org.jabref.gui.exporter.SaveAction.execute(Unknown Source) at org.jabref/org.jabref.gui.actions.JabRefAction.lambda$new$2(Unknown Source) at org.jabref.merged.module/org.controlsfx.control.action.Action.handle(Unknown Source) at org.jabref.merged.module/org.controlsfx.control.action.Action.handle(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source) at org.jabref.merged.module/javafx.event.Event.fireEvent(Unknown Source) at org.jabref.merged.module/javafx.scene.Node.fireEvent(Unknown Source) at org.jabref.merged.module/javafx.scene.control.Button.fire(Unknown Source) at org.jabref.merged.module/com.sun.javafx.scene.control.behavior.ButtonBehavior.mouseReleased(Unknown Source) at org.jabref.merged.module/com.sun.javafx.scene.control.inputmap.InputMap.handle(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source) at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source) at org.jabref.merged.module/javafx.event.Event.fireEvent(Unknown Source) at org.jabref.merged.module/javafx.scene.Scene$MouseHandler.process(Unknown Source) at org.jabref.merged.module/javafx.scene.Scene.processMouseEvent(Unknown Source) at org.jabref.merged.module/javafx.scene.Scene$ScenePeerListener.mouseEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source) at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source) at java.base/java.security.AccessController.doPrivileged(Unknown Source) at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(Unknown Source) at org.jabref.merged.module/com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(Unknown Source) at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(Unknown Source) at org.jabref.merged.module/com.sun.glass.ui.View.handleMouseEvent(Unknown Source) at org.jabref.merged.module/com.sun.glass.ui.View.notifyMouse(Unknown Source) at org.jabref.merged.module/com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method) at org.jabref.merged.module/com.sun.glass.ui.gtk.GtkApplication.lambda$runLoop$11(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) Caused by: java.nio.file.NoSuchFileException: /home/ilippert/Documents/Studies/Publications&Products/Resources/Literature-bibtex.bib.tmp -> /home/ilippert/Documents/Studies/Publications&Products/Resources/Literature-bibtex.bib at java.base/sun.nio.fs.UnixException.translateToIOException(Unknown Source) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(Unknown Source) at java.base/sun.nio.fs.UnixCopyFile.move(Unknown Source) at java.base/sun.nio.fs.UnixFileSystemProvider.move(Unknown Source) at java.base/java.nio.file.Files.move(Unknown Source) at org.jabref/org.jabref.logic.exporter.AtomicFileOutputStream.close(Unknown Source) at java.base/sun.nio.cs.StreamEncoder.implClose(Unknown Source) at java.base/sun.nio.cs.StreamEncoder.close(Unknown Source) at java.base/java.io.OutputStreamWriter.close(Unknown Source) at org.jabref/org.jabref.logic.exporter.BibDatabaseWriter.savePartOfDatabase(Unknown Source) at org.jabref/org.jabref.logic.exporter.BibDatabaseWriter.saveDatabase(Unknown Source) ... 61 more |
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I closed the window of jabref without further error message; but the process did not stop. killing the process after 40 minutes - and CPU use without jabref was normal again. |
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I searched for something, found it, and then started to type in a new search phrase. that got CPU use to 100% and jabref stopped reacting. needed to kill jabref. no exception dialogue shown. |
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It's all the same issue. The autosave manager is triggering UI changes from a non UI Thread. |
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Autosave (in the preferences) is deactivated. |
ilippert
changed the title
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JabRef 5.1--2020-04-25--41b1705 routinely crashes - no exception shown, nothing in the event log. |
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Possible duplicate of #6231 |
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This is
JabRef 5.1--2020-04-23--bbea7df
Linux 5.5.17-200.fc31.x86_64 amd64
Java 14.0.1
I am quite surprised about these characteristics right now (whilst not doing anything with jabref for several minutes):
jabref uses 90-100% of CPU and has a disk read total value of 200MB, but a Disk write total of 6,6GB.
...
after a few minutes of wondering, I am now editing an entry - and I get these exceptions
Log File
java.lang.IllegalStateException: Not on FX application thread; currentThread = pool-7-thread-1 at org.jabref.merged.module/com.sun.javafx.tk.Toolkit.checkFxUserThread(Unknown Source) at org.jabref.merged.module/com.sun.javafx.tk.quantum.QuantumToolkit.checkFxUserThread(Unknown Source) at org.jabref.merged.module/javafx.scene.Parent$3.onProposedChange(Unknown Source) at org.jabref.merged.module/com.sun.javafx.collections.VetoableListDecorator.setAll(Unknown Source) at org.jabref.merged.module/com.sun.javafx.collections.VetoableListDecorator.setAll(Unknown Source) at org.jabref.merged.module/javafx.scene.control.skin.LabeledSkinBase.updateChildren(Unknown Source) at org.jabref.merged.module/javafx.scene.control.skin.LabeledSkinBase.lambda$new$11(Unknown Source) at org.jabref.merged.module/com.sun.javafx.scene.control.LambdaMultiplePropertyChangeListenerHandler.lambda$new$1(Unknown Source) at org.jabref.merged.module/javafx.beans.value.WeakChangeListener.changed(Unknown Source) at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper$SingleChange.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.markInvalid(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.set(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.set(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringProperty.setValue(Unknown Source) at org.jabref.merged.module/javafx.scene.control.Labeled.setText(Unknown Source) at org.jabref.merged.module/javafx.scene.control.skin.TabPaneSkin$TabHeaderSkin.lambda$new$2(Unknown Source) at org.jabref.merged.module/com.sun.javafx.scene.control.LambdaMultiplePropertyChangeListenerHandler.lambda$new$1(Unknown Source) at org.jabref.merged.module/javafx.beans.value.WeakChangeListener.changed(Unknown Source) at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper$Generic.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.markInvalid(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.set(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.set(Unknown Source) at org.jabref.merged.module/javafx.scene.control.Tab.setText(Unknown Source) at org.jabref/org.jabref.gui.JabRefFrame.updateAllTabTitles(Unknown Source) at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source) at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source) at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source) at org.jabref/org.jabref.gui.dialogs.AutosaveUiManager.listen(Unknown Source) at jdk.internal.reflect.GeneratedMethodAccessor46.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.base/java.lang.reflect.Method.invoke(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.Subscriber.invokeSubscriberMethod(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.Subscriber$SynchronizedSubscriber.invokeSubscriberMethod(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.Subscriber$1.run(Unknown Source) at org.jabref.merged.module/com.google.common.util.concurrent.DirectExecutor.execute(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.Subscriber.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.Dispatcher$PerThreadQueuedDispatcher.dispatch(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.EventBus.post(Unknown Source) at org.jabref/org.jabref.logic.autosaveandbackup.AutosaveManager.lambda$listen$0(Unknown Source) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source)Log File
java.lang.IllegalStateException: Not on FX application thread; currentThread = pool-7-thread-1 at org.jabref.merged.module/com.sun.javafx.tk.Toolkit.checkFxUserThread(Unknown Source) at org.jabref.merged.module/com.sun.javafx.tk.quantum.QuantumToolkit.checkFxUserThread(Unknown Source) at org.jabref.merged.module/javafx.scene.Parent$3.onProposedChange(Unknown Source) at org.jabref.merged.module/com.sun.javafx.collections.VetoableListDecorator.setAll(Unknown Source) at org.jabref.merged.module/com.sun.javafx.collections.VetoableListDecorator.setAll(Unknown Source) at org.jabref.merged.module/javafx.scene.control.skin.LabeledSkinBase.updateChildren(Unknown Source) at org.jabref.merged.module/javafx.scene.control.skin.LabeledSkinBase.lambda$new$11(Unknown Source) at org.jabref.merged.module/com.sun.javafx.scene.control.LambdaMultiplePropertyChangeListenerHandler.lambda$new$1(Unknown Source) at org.jabref.merged.module/javafx.beans.value.WeakChangeListener.changed(Unknown Source) at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper$SingleChange.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.markInvalid(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.set(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.set(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringProperty.setValue(Unknown Source) at org.jabref.merged.module/javafx.scene.control.Labeled.setText(Unknown Source) at org.jabref.merged.module/javafx.scene.control.skin.TabPaneSkin$TabHeaderSkin.lambda$new$2(Unknown Source) at org.jabref.merged.module/com.sun.javafx.scene.control.LambdaMultiplePropertyChangeListenerHandler.lambda$new$1(Unknown Source) at org.jabref.merged.module/javafx.beans.value.WeakChangeListener.changed(Unknown Source) at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper$Generic.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.fireValueChangedEvent(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.markInvalid(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.set(Unknown Source) at org.jabref.merged.module/javafx.beans.property.StringPropertyBase.set(Unknown Source) at org.jabref.merged.module/javafx.scene.control.Tab.setText(Unknown Source) at org.jabref/org.jabref.gui.JabRefFrame.updateAllTabTitles(Unknown Source) at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source) at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source) at org.jabref/org.jabref.gui.exporter.SaveDatabaseAction.save(Unknown Source) at org.jabref/org.jabref.gui.dialogs.AutosaveUiManager.listen(Unknown Source) at jdk.internal.reflect.GeneratedMethodAccessor46.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.base/java.lang.reflect.Method.invoke(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.Subscriber.invokeSubscriberMethod(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.Subscriber$SynchronizedSubscriber.invokeSubscriberMethod(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.Subscriber$1.run(Unknown Source) at org.jabref.merged.module/com.google.common.util.concurrent.DirectExecutor.execute(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.Subscriber.dispatchEvent(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.Dispatcher$PerThreadQueuedDispatcher.dispatch(Unknown Source) at org.jabref.merged.module/com.google.common.eventbus.EventBus.post(Unknown Source) at org.jabref/org.jabref.logic.autosaveandbackup.AutosaveManager.lambda$listen$0(Unknown Source) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source)The text was updated successfully, but these errors were encountered: