We have developed a R package NetGAP for network-based gene prioritization using text-mining and coexpression networks. NetORA is an extension of this package to perform network-based pathway enrichment analysis.
library("devtools")
install_github("JiantaoShi/NetORA")
NetORA depends on NetGPA. So you should install this package as welll.
Please read this vignettes vignettes for introduction and application.
If you have any questions or feedback, please contact us at:
Email: jshi@jimmy.harvard.edu