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DESCRIPTION
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DESCRIPTION
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Package: VariantAnnotation
Type: Package
Title: Annotation of Genetic Variants
Description: Annotate variants, compute amino acid coding changes,
predict coding outcomes.
Version: 1.33.1
Authors@R: c(person("Valerie", "Obenchain", role=c("aut", "cre"),
email="maintainer@bioconductor.org"),
person("Martin", "Morgan", role="aut"),
person("Michael", "Lawrence", role="aut"),
person("Stephanie", "Gogarten", role="ctb"))
License: Artistic-2.0
Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.15.3),
GenomeInfoDb (>= 1.15.2), GenomicRanges (>= 1.37.4),
SummarizedExperiment (>= 1.9.9), Rsamtools (>= 1.99.0)
Imports: utils, DBI, zlibbioc, Biobase, S4Vectors (>= 0.17.24),
IRanges (>= 2.13.13), XVector (>= 0.19.7), Biostrings (>= 2.47.6),
AnnotationDbi (>= 1.27.9), rtracklayer (>= 1.39.7),
BSgenome (>= 1.47.3), GenomicFeatures (>= 1.31.3)
Suggests: RUnit, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132,
SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats,
ggplot2, BiocStyle
LinkingTo: S4Vectors, IRanges, XVector, Biostrings, Rhtslib
SystemRequirements: GNU make
LazyLoad: yes
biocViews: DataImport, Sequencing, SNP, Annotation,
Genetics, VariantAnnotation
Video: https://www.youtube.com/watch?v=Ro0lHQ_J--I&list=UUqaMSQd_h-2EDGsU6WDiX0Q