You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
While attempting to parallelize BXA with mpi, h5py file is created but locked. After following recommendation in previous (closed) bxa issue thread here, and attempting to reinstall all dependencies, problem persists, but with new error.
I read many forums regarding the errors, and they have recommended reinstalling dependencies, it seems as though the h5py file is corrupted while being created.
What I Did
Old error:
Traceback (most recent call last):
File "/home/jpbreuer/Scripts/bxa_test.py", line 373, in <module>
results = solver.run(resume=True)
File "/home/jpbreuer/.local/lib/python3.9/site-packages/bxa/xspec/solver.py", line 188, in run
self.results = solve(
File "/home/jpbreuer/.local/lib/python3.9/site-packages/ultranest/solvecompat.py", line 55, in pymultinest_solve_compat
sampler = ReactiveNestedSampler(
File "/home/jpbreuer/.local/lib/python3.9/site-packages/ultranest/integrator.py", line 1077, in __init__
self.pointstore = HDF5PointStore(storage_filename, storage_num_cols, mode='a' if resume else 'w')
File "/home/jpbreuer/.local/lib/python3.9/site-packages/ultranest/store.py", line 187, in __init__
self.fileobj = h5py.File(filepath, **h5_file_args)
File "/home/jpbreuer/.local/lib/python3.9/site-packages/h5py/_hl/files.py", line 507, in __init__
fid = make_fid(name, mode, userblock_size, fapl, fcpl, swmr=swmr)
File "/home/jpbreuer/.local/lib/python3.9/site-packages/h5py/_hl/files.py", line 232, in make_fid
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
File "h5py/h5f.pyx", line 106, in h5py.h5f.open
BlockingIOError: [Errno 11] Unable to open file (unable to lock file, errno = 11, error message = 'Resource temporarily unavailable')
Updated error:
Traceback (most recent call last):
File "/home/jpbreuer/Scripts/bxa_test.py", line 128, in <module>
results = solver.run(resume=True)
File "/usr/local/lib/python3.9/dist-packages/bxa/xspec/solver.py", line 188, in run
self.results = solve(
File "/usr/local/lib/python3.9/dist-packages/ultranest/solvecompat.py", line 55, in pymultinest_solve_compat
sampler = ReactiveNestedSampler(
File "/usr/local/lib/python3.9/dist-packages/ultranest/integrator.py", line 1077, in __init__
self.pointstore = HDF5PointStore(storage_filename, storage_num_cols, mode='a' if resume else 'w')
File "/usr/local/lib/python3.9/dist-packages/ultranest/store.py", line 187, in __init__
self.fileobj = h5py.File(filepath, **h5_file_args)
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py", line 387, in __init__
fid = make_fid(name, mode, userblock_size,
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py", line 187, in make_fid
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/h5f.pyx", line 108, in h5py._debian_h5py_serial.h5f.create
OSError: Unable to create file (unable to open file: name = 'bxatest/results/points.hdf5', errno = 17, error message = 'File exists', flags = 15, o_flags = c2)
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py", line 185, in make_fid
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/h5f.pyx", line 88, in h5py._debian_h5py_serial.h5f.open
OSError: Unable to open file (truncated file: eof = 96, sblock->base_addr = 0, stored_eof = 2048)
The text was updated successfully, but these errors were encountered:
Description
While attempting to parallelize BXA with mpi, h5py file is created but locked. After following recommendation in previous (closed) bxa issue thread here, and attempting to reinstall all dependencies, problem persists, but with new error.
I read many forums regarding the errors, and they have recommended reinstalling dependencies, it seems as though the h5py file is corrupted while being created.
What I Did
Old error:
Updated error:
The text was updated successfully, but these errors were encountered: