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eeglab.m
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eeglab.m
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% eeglab() - Matlab graphic user interface environment for
% electrophysiological data analysis incorporating the ICA/EEG toolbox
% (Makeig et al.) developed at CNL / The Salk Institute, 1997-2001.
% Released 11/2002- as EEGLAB (Delorme, Makeig, et al.) at the Swartz Center
% for Computational Neuroscience, Institute for Neural Computation,
% University of California San Diego (http://sccn.ucsd.edu/).
% User feedback welcome: email eeglab@sccn.ucsd.edu
%
% Authors: Arnaud Delorme and Scott Makeig, with substantial contributions
% from Colin Humphries, Sigurd Enghoff, Tzyy-Ping Jung, plus
% contributions
% from Tony Bell, Te-Won Lee, Luca Finelli and many other contributors.
%
% Description:
% EEGLAB is Matlab-based software for processing continuous or event-related
% EEG or other physiological data. It is designed for use by both novice and
% expert Matlab users. In normal use, the EEGLAB graphic interface calls
% graphic functions via pop-up function windows. The EEGLAB history mechanism
% can save the resulting Matlab calls to disk for later incorporation into
% Matlab scripts. A single data structure ('EEG') containing all dataset
% parameters may be accessed and modified directly from the Matlab commandline.
% EEGLAB now recognizes "plugins," sets of EEGLAB functions linked to the EEGLAB
% main menu through an "eegplugin_[name].m" function (Ex. >> help eeplugin_besa.m).
%
% Usage: 1) To (re)start EEGLAB, type
% >> eeglab % Ignores any loaded datasets
% 2) To redaw and update the EEGLAB interface, type
% >> eeglab redraw % Scans for non-empty datasets
% >> eeglab rebuild % Closes and rebuilds the EEGLAB window
% >> eeglab versions % State EEGLAB version number
%
% >> type "eeglablicense.txt" % the EEGLAB open source license
% >> web http://eeglab.org % the EEGLAB tutorial
% >> help eeg_checkset % the EEG dataset structure
%
% GUI Functions calling eponymous processing and plotting functions:
% ------------------------------------------------------------------
% <a href="matlab:helpwin pop_eegfilt">pop_eegfilt</a> - bandpass filter data (eegfilt())
% <a href="matlab:helpwin pop_eegplot">pop_eegplot</a> - scrolling multichannel data viewer (eegplot())
% <a href="matlab:helpwin pop_eegthresh">pop_eegthresh</a> - simple thresholding method (eegthresh())
% <a href="matlab:helpwin pop_envtopo">pop_envtopo</a> - plot ERP data and component contributions (envtopo())
% <a href="matlab:helpwin pop_epoch">pop_epoch</a> - extract epochs from a continuous dataset (epoch())
% <a href="matlab:helpwin pop_erpimage">pop_erpimage</a> - plot single epochs as an image (erpimage())
% <a href="matlab:helpwin pop_jointprob">pop_jointprob</a> - reject epochs using joint probability (jointprob())
% <a href="matlab:helpwin pop_loadbva">pop_loadbva</a> - load Brain Vision Analyser matlab files
% <a href="matlab:helpwin pop_plotdata">pop_plotdata</a> - plot data epochs in rectangular array (plotdata())
% <a href="matlab:helpwin pop_readegi">pop_readegi</a> - load binary EGI data file (readegi())
% <a href="matlab:helpwin pop_rejkurt">pop_rejkurt</a> - compute data kurtosis (rejkurt())
% <a href="matlab:helpwin pop_rejtrend">pop_rejtrend</a> - reject EEG epochs showing linear trends (rejtrend())
% <a href="matlab:helpwin pop_resample">pop_resample</a> - change data sampling rate (resample())
% <a href="matlab:helpwin pop_rmbase">pop_rmbase</a> - remove epoch baseline (rmbase())
% <a href="matlab:helpwin pop_runica">pop_runica</a> - run infomax ICA decomposition (runica())
% <a href="matlab:helpwin pop_newtimef">pop_newtimef</a> - event-related time-frequency (newtimef())
% <a href="matlab:helpwin pop_timtopo">pop_timtopo</a> - plot ERP and scalp maps (timtopo())
% <a href="matlab:helpwin pop_topoplot">pop_topoplot</a> - plot scalp maps (topoplot())
% <a href="matlab:helpwin pop_snapread">pop_snapread</a> - read Snapmaster .SMA files (snapread())
% <a href="matlab:helpwin pop_newcrossf">pop_newcrossf</a> - event-related cross-coherence (newcrossf())
% <a href="matlab:helpwin pop_spectopo">pop_spectopo</a> - plot all channel spectra and scalp maps (spectopo())
% <a href="matlab:helpwin pop_plottopo">pop_plottopo</a> - plot a data epoch in a topographic array (plottopo())
% <a href="matlab:helpwin pop_readedf">pop_readedf</a> - read .EDF EEG data format (readedf())
% <a href="matlab:helpwin pop_headplot">pop_headplot</a> - plot a 3-D data scalp map (headplot())
% <a href="matlab:helpwin pop_reref">pop_reref</a> - re-reference data (reref())
% <a href="matlab:helpwin pop_signalstat">pop_signalstat</a> - plot signal or component statistic (signalstat())
%
% Other GUI functions:
% -------------------
% <a href="matlab:helpwin pop_chanevent">pop_chanevent</a> - import events stored in data channel(s)
% <a href="matlab:helpwin pop_comments">pop_comments</a> - edit dataset comment ('about') text
% <a href="matlab:helpwin pop_compareerps">pop_compareerps</a> - compare two dataset ERPs using plottopo()
% <a href="matlab:helpwin pop_prop">pop_prop</a> - plot channel or component properties (erpimage, spectra, map)
% <a href="matlab:helpwin pop_copyset">pop_copyset</a> - copy dataset
% <a href="matlab:helpwin pop_dispcomp">pop_dispcomp</a> - display component scalp maps with reject buttons
% <a href="matlab:helpwin pop_editeventfield">pop_editeventfield</a> - edit event fields
% <a href="matlab:helpwin pop_editeventvals">pop_editeventvals</a> - edit event values
% <a href="matlab:helpwin pop_editset">pop_editset</a> - edit dataset information
% <a href="matlab:helpwin pop_export">pop_export</a> - export data or ica activity to ASCII file
% <a href="matlab:helpwin pop_expica">pop_expica</a> - export ica weights or inverse matrix to ASCII file
% <a href="matlab:helpwin pop_icathresh">pop_icathresh</a> - choose rejection thresholds (in development)
% <a href="matlab:helpwin pop_importepoch">pop_importepoch</a> - import epoch info ASCII file
% <a href="matlab:helpwin pop_importevent">pop_importevent</a> - import event info ASCII file
% <a href="matlab:helpwin pop_importpres">pop_importpres</a> - import Presentation info file
% <a href="matlab:helpwin pop_importev2">pop_importev2</a> - import Neuroscan ev2 file
% <a href="matlab:helpwin pop_loadset">pop_loadset</a> - load dataset
% <a href="matlab:helpwin pop_mergeset">pop_mergeset</a> - merge two datasets
% <a href="matlab:helpwin pop_rejepoch">pop_rejepoch</a> - reject pre-identified epochs in a EEG dataset
% <a href="matlab:helpwin pop_rejspec">pop_rejspec</a> - reject based on spectrum (computes spectrum -% eegthresh)
% <a href="matlab:helpwin pop_saveh">pop_saveh</a> - save EEGLAB command history
% <a href="matlab:helpwin pop_saveset">pop_saveset</a> - save dataset
% <a href="matlab:helpwin pop_select">pop_select</a> - select data (epochs, time points, channels ...)
% <a href="matlab:helpwin pop_selectevent">pop_selectevent</a> - select events
% <a href="matlab:helpwin pop_subcomp">pop_subcomp</a> - subtract components from data
%
% Non-GUI functions use for handling the EEG structure:
% ----------------------------------------------------
% <a href="matlab:helpwin eeg_checkset">eeg_checkset</a> - check dataset parameter consistency
% <a href="matlab:helpwin eeg_context">eeg_context</a> - return info about events surrounding given events
% <a href="matlab:helpwin pop_delset">pop_delset</a> - delete dataset
% <a href="matlab:helpwin pop_editoptions">pop_editoptions</a> - edit the option file
% <a href="matlab:helpwin eeg_emptyset">eeg_emptyset</a> - empty dataset
% <a href="matlab:helpwin eeg_epochformat">eeg_epochformat</a> - convert epoch array to structure
% <a href="matlab:helpwin eeg_eventformat">eeg_eventformat</a> - convert event array to structure
% <a href="matlab:helpwin eeg_getepochevent">eeg_getepochevent</a> - return event values for a subset of event types
% <a href="matlab:helpwin eeg_global">eeg_global</a> - global variables
% <a href="matlab:helpwin eeg_multieegplot">eeg_multieegplot</a> - plot several rejections (using different colors)
% <a href="matlab:helpwin eeg_options">eeg_options</a> - option file
% <a href="matlab:helpwin eeg_rejsuperpose">eeg_rejsuperpose</a> - use by rejmenu to superpose all rejections
% <a href="matlab:helpwin eeg_rejmacro">eeg_rejmacro</a> - used by all rejection functions
% <a href="matlab:helpwin pop_rejmenu">pop_rejmenu</a> - rejection menu (with all rejection methods visible)
% <a href="matlab:helpwin eeg_retrieve">eeg_retrieve</a> - retrieve dataset from ALLEEG
% <a href="matlab:helpwin eeg_store">eeg_store</a> - store dataset into ALLEEG
%
% Help functions:
% --------------
% <a href="matlab:helpwin eeg_helpadmin">eeg_helpadmin</a> - help on admin function
% <a href="matlab:helpwin eeg_helphelp">eeg_helphelp</a> - help on help
% <a href="matlab:helpwin eeg_helpmenu">eeg_helpmenu</a> - EEG help menus
% <a href="matlab:helpwin eeg_helppop">eeg_helppop</a> - help on pop_ and eeg_ functions
% <a href="matlab:helpwin eeg_helpsigproc">eeg_helpsigproc</a> - help on
% Copyright (C) 2001 Arnaud Delorme and Scott Makeig, Salk Institute,
% arno@salk.edu, smakeig@ucsd.edu.
%
% Copyright (C) 2001 Arnaud Delorme, SCCN/INC/UCSD, arno@salk.edu
%
% This file is part of EEGLAB, see http://www.eeglab.org
% for the documentation and details.
%
% Redistribution and use in source and binary forms, with or without
% modification, are permitted provided that the following conditions are met:
%
% 1. Redistributions of source code must retain the above copyright notice,
% this list of conditions and the following disclaimer.
%
% 2. Redistributions in binary form must reproduce the above copyright notice,
% this list of conditions and the following disclaimer in the documentation
% and/or other materials provided with the distribution.
%
% THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
% AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
% IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
% ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
% LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
% CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
% SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
% INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
% CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
% ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
% THE POSSIBILITY OF SUCH DAMAGE.
function varargout = eeglab( onearg )
ver = version;
if strcmpi(ver, '9.4.0.813654 (R2018a)')
disp('Link to install <a href="https://www.mathworks.com/downloads/web_downloads/download_update?release=R2018a&s_tid=ebrg_R2018a_2_1757132">2018a Update 2</a>');
errordlg( [ 'You are running Matlab version R2018a, which has important bugs' 10 'Matlab crashes when running EEGLAB in this vesion of Matlab' 10 'Install 2018a Update 2 to fix the issue (link on the command line)' ]);
end
if nargout > 0
varargout = { [] [] 0 {} [] };
end
% check Matlab version
% --------------------
vers = version;
indp = find(vers == '.');
if str2num(vers(indp(1)+1)) > 1, vers = [ vers(1:indp(1)) '0' vers(indp(1)+1:end) ]; end
indp = find(vers == '.');
vers = str2num(vers(1:indp(2)-1));
tmpv = which('version');
if ~isempty(findstr(lower(tmpv), 'biosig'))
[tmpp tmp] = fileparts(tmpv);
rmpath(tmpp);
end
% remove freemat folder if it exist
tmpPath = fileparts(fileparts(which('sread')));
newPath = fullfile(tmpPath, 'maybe-missing', 'freemat3.5');
if exist(newPath) == 7
warning('off', 'MATLAB:rmpath:DirNotFound');
rmpath(newPath)
warning('on', 'MATLAB:rmpath:DirNotFound');
end
if ismatlab && vers < 7
tmpWarning = warning('query', 'backtrace');
warning('off', 'backtrace');
warning('This Matlab version is too old to run the current EEGLAB');
warning('Download EEGLAB 4.3b at http://sccn.ucsd.edu/eeglab/eeglab4.5b.teaching.zip');
warning('This version of EEGLAB is compatible with all Matlab version down to Matlab 5.3');
warning(tmpWarning.state, 'backtrace');
return;
end
if ismatlab && vers < 7.06
tmpWarning = warning('query','backtrace');
warning off backtrace;
warning('You are using a Matlab version older than 7.6 (2008a)');
warning('Some of the EEGLAB functions might not be functional');
warning('Download EEGLAB 4.3b at http://sccn.ucsd.edu/eeglab/eeglab4.5b.teaching.zip');
warning('This version of EEGLAB is compatible with all Matlab version down to Matlab 5.3');
warning( tmpWarning.state, 'backtrace');
end
if ~ismatlab
warning('off', 'Octave:abbreviated-property-match');
warning('off', 'backtrace');
warning('off', 'Octave:divide-by-zero');
try
pkg load statistics
catch
warning('Statistics module not found - type "pkg install -forge io" then "pkg install -forge statistics" to install it');
end
try
pkg load signal
catch
warning('Signal processing module not found - type "pkg install -forge control" then "pkg install -forge signal" to install it');
end
end
% check for duplicate versions of EEGLAB
% --------------------------------------
eeglabpath = mywhich('eeglab.m');
eeglabpath = eeglabpath(1:end-length('eeglab.m'));
if nargin < 1 && ~isdeployed
eeglabpath2 = '';
if strcmpi(eeglabpath, pwd) || strcmpi(eeglabpath(1:end-1), pwd)
cd('functions');
warning('off', 'MATLAB:rmpath:DirNotFound');
rmpath(eeglabpath);
warning('on', 'MATLAB:rmpath:DirNotFound');
eeglabpath2 = mywhich('eeglab.m');
cd('..');
else
try, rmpath(eeglabpath); catch, end
eeglabpath2 = mywhich('eeglab.m');
end
if ~isempty(eeglabpath2)
%evalin('base', 'clear classes updater;'); % this clears all the variables
eeglabpath2 = eeglabpath2(1:end-length('eeglab.m'));
tmpWarning = warning('query', 'backtrace');
warning off backtrace;
disp('******************************************************');
warning('There are at least two versions of EEGLAB in your path');
warning(sprintf('One is at %s', eeglabpath));
warning(sprintf('The other one is at %s', eeglabpath2));
warning(tmpWarning.state, 'backtrace');
end
addpath(eeglabpath);
end
% add the paths
% -------------
if strcmpi(eeglabpath, './') || strcmpi(eeglabpath, '.\'), eeglabpath = [ pwd filesep ]; end
% solve BIOSIG problem
% --------------------
pathtmp = mywhich('wilcoxon_test');
if ~isempty(pathtmp)
try,
rmpath(pathtmp(1:end-15));
catch, end
end
% test for local SCCN copy
% ------------------------
if ~isdeployed
addpathifnotinlist(eeglabpath);
if exist( fullfile( eeglabpath, 'functions', 'adminfunc') ) ~= 7
warning('EEGLAB subfolders not found');
end
end
% determine file format
% ---------------------
fileformat = 'maclinux';
comp = computer;
try
if strcmpi(comp(1:3), 'GLN') || strcmpi(comp(1:3), 'MAC') || strcmpi(comp(1:3), 'SOL')
fileformat = 'maclinux';
elseif strcmpi(comp(1:5), 'pcwin')
fileformat = 'pcwin';
end
end
% add paths
% ---------
if ~isdeployed
tmp = which('eeglab_data.set');
if ~isempty(which('eeglab_data.set')) && ~isempty(which('Standard-10-10-Cap47.ced'))
tmpWarning = warning('query', 'backtrace');
warning off backtrace;
warning(sprintf([ '\n\nPath Warning: It appears that you have added the path to all of the\n' ...
'subfolders to EEGLAB. This may create issues with some EEGLAB extensions\n' ...
'If EEGLAB cannot start or your experience a large number of warning\n' ...
'messages, remove all the EEGLAB paths then go to the EEGLAB folder\n' ...
'and start EEGLAB which will add all the necessary paths.\n\n' ]));
warning(tmpWarning.state, 'backtrace');
foldertorm = fileparts(which('fgetl.m'));
if ~isempty(strfind(foldertorm, 'eeglab'))
rmpath(foldertorm);
end
foldertorm = fileparts(which('strjoin.m'));
if ~isempty(strfind(foldertorm, 'eeglab'))
rmpath(foldertorm);
end
end
myaddpath( eeglabpath, 'eeg_checkset.m', [ 'functions' filesep 'adminfunc' ]);
myaddpath( eeglabpath, 'eeg_checkset.m', [ 'functions' filesep 'adminfunc' ]);
myaddpath( eeglabpath, ['@mmo' filesep 'mmo.m'], 'functions');
myaddpath( eeglabpath, 'readeetraklocs.m', [ 'functions' filesep 'sigprocfunc' ]);
myaddpath( eeglabpath, 'supergui.m', [ 'functions' filesep 'guifunc' ]);
myaddpath( eeglabpath, 'pop_study.m', [ 'functions' filesep 'studyfunc' ]);
myaddpath( eeglabpath, 'pop_loadbci.m', [ 'functions' filesep 'popfunc' ]);
myaddpath( eeglabpath, 'statcond.m', [ 'functions' filesep 'statistics' ]);
myaddpath( eeglabpath, 'timefreq.m', [ 'functions' filesep 'timefreqfunc' ]);
myaddpath( eeglabpath, 'icademo.m', [ 'functions' filesep 'miscfunc' ]);
myaddpath( eeglabpath, 'eeglab1020.ced', [ 'functions' filesep 'supportfiles' ]);
myaddpath( eeglabpath, 'startpane.m', [ 'functions' filesep 'javachatfunc' ]);
addpathifnotinlist(fullfile(eeglabpath, 'plugins'));
eeglab_options;
% remove path to to fmrlab if neceecessary
path_runica = fileparts(mywhich('runica'));
if length(path_runica) > 6 && strcmpi(path_runica(end-5:end), 'fmrlab')
rmpath(path_runica);
end
% add path if toolboxes are missing
% ---------------------------------
if option_donotusetoolboxes
p1 = fileparts(mywhich('ttest'));
p2 = fileparts(mywhich('filtfilt'));
p3 = fileparts(mywhich('optimtool'));
p4 = fileparts(mywhich('gray2ind'));
if ~isempty(p1), rmpath(p1); end
if ~isempty(p2), rmpath(p2); end
if ~isempty(p3), rmpath(p3); end
if ~isempty(p4), rmpath(p4); end
end
% remove BIOSIG path which are not needed and might cause conflicts
biosigp{1} = fileparts(which('sopen.m'));
biosigp{2} = fileparts(which('regress_eog.m'));
biosigp{3} = fileparts(which('DecimalFactors.txt'));
removepath(fileparts(fileparts(biosigp{1})), biosigp{:})
else
eeglab_options;
end
% declare the variables as global
evalin('base', 'eeg_global;');
eeg_global;
% remove empty datasets in ALLEEG
while ~isempty(ALLEEG) && isempty(ALLEEG(end).data)
ALLEEG(end) = [];
end
if ~isempty(ALLEEG) && max(CURRENTSET) > length(ALLEEG)
CURRENTSET = 1;
EEG = eeg_retrieve(ALLEEG, CURRENTSET);
end
% for the history function
% ------------------------
comtmp = 'warning off MATLAB:mir_warning_variable_used_as_function';
evalin('base' , comtmp, '');
evalin('caller', comtmp, '');
evalin('base', 'eeg_global;');
if nargin < 1 || exist('EEG') ~= 1
EEG = [];
ALLEEG = [];
CURRENTSET = [];
ALLCOM = [];
LASTCOM = [];
STUDY =[];
CURRENTSTUDY = 0;
EEG = eeg_emptyset;
eegh('[ALLEEG EEG CURRENTSET ALLCOM] = eeglab;');
if ismatlab && get(0, 'screendepth') <= 8
disp('Warning: screen color depth too low, some colors will be inaccurate in time-frequency plots');
end
end
if nargin == 1
if strcmp(onearg, 'versions')
disp( [ 'EEGLAB v' eeg_getversion ] );
elseif strcmp(onearg, 'nogui')
if nargout < 1, clear ALLEEG; end % do not return output var
return;
elseif strcmp(onearg, 'redraw')
W_MAIN = findobj('tag', 'EEGLAB');
if ~isempty(W_MAIN)
updatemenu;
if nargout < 1, clear ALLEEG; end % do not return output var
return;
else
eegh('eeglab(''redraw'');');
end
elseif strcmp(onearg, 'rebuild')
W_MAIN = findobj('tag', 'EEGLAB');
close(W_MAIN);
eeglab redraw;
return;
else
fprintf(2,['EEGLAB Warning: Invalid argument ''' onearg '''. Restarting EEGLAB interface instead.\n']);
eegh('[ALLEEG EEG CURRENTSET ALLCOM] = eeglab(''rebuild'');');
end
else
onearg = 'rebuild';
end
ALLCOM = ALLCOM;
try, colordef('white'); catch end
% default option folder
% ---------------------
if ~isdeployed
eeglab_options;
fprintf('eeglab: options file is %s%seeg_options.m\n', homefolder, filesep);
end
% checking strings
% ----------------
e_try = 'try,';
e_catch = 'catch, eeglab_error; LASTCOM= ''''; clear EEGTMP ALLEEGTMP STUDYTMP; end;';
nocheck = e_try;
ret = 'if ~isempty(LASTCOM), if LASTCOM(1) == -1, LASTCOM = ''''; return; end; end;';
check = ['[EEG LASTCOM] = eeg_checkset(EEG, ''data'');' ret ' eegh(LASTCOM);' e_try];
checkcont = ['[EEG LASTCOM] = eeg_checkset(EEG, ''contdata'');' ret ' eegh(LASTCOM);' e_try];
checkica = ['[EEG LASTCOM] = eeg_checkset(EEG, ''ica'');' ret ' eegh(LASTCOM);' e_try];
checkepoch = ['[EEG LASTCOM] = eeg_checkset(EEG, ''epoch'');' ret ' eegh(LASTCOM);' e_try];
checkevent = ['[EEG LASTCOM] = eeg_checkset(EEG, ''event'');' ret ' eegh(LASTCOM);' e_try];
checkbesa = ['[EEG LASTCOM] = eeg_checkset(EEG, ''besa'');' ret ' eegh(''% no history yet for BESA dipole localization'');' e_try];
checkepochica = ['[EEG LASTCOM] = eeg_checkset(EEG, ''epoch'', ''ica'');' ret ' eegh(LASTCOM);' e_try];
checkplot = ['[EEG LASTCOM] = eeg_checkset(EEG, ''chanloc'');' ret ' eegh(LASTCOM);' e_try];
checkicaplot = ['[EEG LASTCOM] = eeg_checkset(EEG, ''ica'', ''chanloc'');' ret ' eegh(LASTCOM);' e_try];
checkepochplot = ['[EEG LASTCOM] = eeg_checkset(EEG, ''epoch'', ''chanloc'');' ret ' eegh(LASTCOM);' e_try];
checkepochicaplot = ['[EEG LASTCOM] = eeg_checkset(EEG, ''epoch'', ''ica'', ''chanloc'');' ret ' eegh(LASTCOM);' e_try];
% check string and backup old dataset
% -----------------------------------
backup = [ 'if CURRENTSET ~= 0,' ...
' [ ALLEEG EEG ] = eeg_store(ALLEEG, EEG, CURRENTSET, ''savegui'');' ...
' eegh(''[ALLEEG EEG] = eeg_store(ALLEEG, EEG, CURRENTSET, ''''savedata'''');'');' ...
'end;' ];
storecall = '[ALLEEG EEG] = eeg_store(ALLEEG, EEG, CURRENTSET); eegh(''[ALLEEG EEG] = eeg_store(ALLEEG, EEG, CURRENTSET);'');';
storenewcall = '[ALLEEG EEG CURRENTSET LASTCOM] = pop_newset(ALLEEG, EEG, CURRENTSET, ''study'', ~isempty(STUDY)+0); eegh(LASTCOM);';
storeallcall = [ 'if ~isempty(ALLEEG) && ~isempty(ALLEEG(1).data), ALLEEG = eeg_checkset(ALLEEG);' ...
'EEG = eeg_retrieve(ALLEEG, CURRENTSET); eegh(''ALLEEG = eeg_checkset(ALLEEG); EEG = eeg_retrieve(ALLEEG, CURRENTSET);''); end;' ];
testeegtmp = 'if exist(''EEGTMP'') == 1, EEG = EEGTMP; clear EEGTMP; end;'; % for backward compatibility
ifeeg = 'if ~isempty(LASTCOM) && ~isempty(EEG),';
ifeegnh = 'if ~isempty(LASTCOM) && ~isempty(EEG) && ~isempty(findstr(''='',LASTCOM)),';
% nh = no dataset history
% -----------------------
e_storeall_nh = [e_catch 'eegh(LASTCOM);' ifeeg storeallcall 'disp(''Done.''); end; eeglab(''redraw'');'];
e_hist_nh = [e_catch 'eegh(LASTCOM);'];
% same as above but also save history in dataset
% ----------------------------------------------
e_newset = [e_catch 'EEG = eegh(LASTCOM, EEG);' testeegtmp ifeeg storenewcall 'disp(''Done.''); end; eeglab(''redraw'');'];
e_store = [e_catch 'EEG = eegh(LASTCOM, EEG);' ifeegnh storecall 'disp(''Done.''); end; eeglab(''redraw'');'];
e_hist = [e_catch 'EEG = eegh(LASTCOM, EEG);'];
e_histdone = [e_catch 'EEG = eegh(LASTCOM, EEG); if ~isempty(LASTCOM), disp(''Done.''); end;' ];
% study checking
% --------------
e_check_study = 'if length(EEG) > 1 && CURRENTSTUDY == 1, STUDY = std_checkset(STUDY, ALLEEG); eegh(''STUDY = std_checkset(STUDY, ALLEEG);''); end;';
e_load_study = [e_catch 'if ~isempty(LASTCOM), STUDY = STUDYTMP; STUDY = eegh(LASTCOM, STUDY); ALLEEG = ALLEEGTMP; EEG = ALLEEG; CURRENTSET = [1:length(EEG)]; eegh(''CURRENTSTUDY = 1; EEG = ALLEEG; CURRENTSET = [1:length(EEG)];''); CURRENTSTUDY = 1; disp(''Done.''); end; clear ALLEEGTMP STUDYTMP; eeglab(''redraw'');'];
e_plot_study = [e_catch 'if ~isempty(LASTCOM), STUDY = STUDYTMP; STUDY = eegh(LASTCOM, STUDY); disp(''Done.''); end; clear ALLEEGTMP STUDYTMP; eeglab(''redraw'');']; % ALLEEG not modified
% build structures for plugins
% ----------------------------
trystrs.no_check = e_try;
trystrs.check_data = check;
trystrs.check_ica = checkica;
trystrs.check_cont = checkcont;
trystrs.check_epoch = checkepoch;
trystrs.check_event = checkevent;
trystrs.check_epoch_ica = checkepochica;
trystrs.check_chanlocs = checkplot;
trystrs.check_epoch_chanlocs = checkepochplot;
trystrs.check_epoch_ica_chanlocs = checkepochicaplot;
catchstrs.add_to_hist = e_hist;
catchstrs.store_and_hist = e_store;
catchstrs.new_and_hist = e_newset;
catchstrs.new_non_empty = e_newset;
catchstrs.update_study = e_plot_study;
catchstrs.load_study = e_load_study;
% create eeglab figure
% --------------------
if ismatlab
eeg_mainfig(onearg);
end
% detecting icalab
% ----------------
if exist('icalab')
disp('ICALAB toolbox detected (algo. added to "run ICA" interface)');
end
if ~isdeployed
% check for older version of Fieldtrip and presence of topoplot
% -------------------------------------------------------------
ptopoplot = fileparts(mywhich('cbar'));
ptopoplot2 = fileparts(mywhich('topoplot'));
if ~strcmpi(ptopoplot, ptopoplot2),
%disp(' Warning: duplicate function topoplot.m in Fieldtrip and EEGLAB');
%disp(' EEGLAB function will prevail and call the Fieldtrip one when appropriate');
addpath(ptopoplot);
end
end
cb_importdata = [ nocheck '[EEG LASTCOM] = pop_importdata;' e_newset ];
cb_biosig = [ nocheck '[EEG LASTCOM] = pop_biosig; ' e_newset ];
cb_fileio = [ nocheck '[EEG LASTCOM] = pop_fileio; ' e_newset ];
cb_importepoch = [ checkepoch '[EEG LASTCOM] = pop_importepoch(EEG);' e_store ];
cb_importevent = [ check '[EEG LASTCOM] = pop_importevent(EEG);' e_store ];
cb_chanevent = [ check '[EEG LASTCOM]= pop_chanevent(EEG);' e_store ];
cb_importpres = [ check '[EEG LASTCOM]= pop_importpres(EEG);' e_store ];
cb_importerplab= [ check '[EEG LASTCOM]= pop_importerplab(EEG);' e_store ];
cb_export = [ check 'LASTCOM = pop_export(EEG);' e_histdone ];
cb_expica1 = [ check 'LASTCOM = pop_expica(EEG, ''weights'');' e_histdone ];
cb_expica2 = [ check 'LASTCOM = pop_expica(EEG, ''inv'');' e_histdone ];
cb_expevents = [ check 'LASTCOM = pop_expevents(EEG);' e_histdone ];
cb_expdata = [ check 'LASTCOM = pop_writeeeg(EEG);' e_histdone ];
cb_loadset = [ nocheck '[EEG LASTCOM] = pop_loadset;' e_newset];
cb_saveset = [ check '[EEG LASTCOM] = pop_saveset(EEG, ''savemode'', ''resave'');' e_store ];
cb_savesetas = [ check '[EEG LASTCOM] = pop_saveset(EEG);' e_store ];
cb_delset = [ nocheck '[ALLEEG LASTCOM] = pop_delset(ALLEEG, -CURRENTSET);' e_hist_nh 'eeglab redraw;' ];
cb_study1 = [ nocheck 'pop_stdwarn; [STUDYTMP ALLEEGTMP LASTCOM] = pop_study([], ALLEEG , ''gui'', ''on'');' e_load_study];
cb_study2 = [ nocheck 'pop_stdwarn; [STUDYTMP ALLEEGTMP LASTCOM] = pop_study([], isempty(ALLEEG), ''gui'', ''on'');' e_load_study];
cb_studyerp = [ nocheck 'pop_stdwarn; [STUDYTMP ALLEEGTMP LASTCOM] = pop_studyerp;' e_load_study];
cb_loadstudy = [ nocheck 'pop_stdwarn; [STUDYTMP ALLEEGTMP LASTCOM] = pop_loadstudy; if ~isempty(LASTCOM), STUDYTMP = std_renamestudyfiles(STUDYTMP, ALLEEGTMP); end;' e_load_study];
cb_savestudy1 = [ check '[STUDYTMP ALLEEGTMP LASTCOM] = pop_savestudy(STUDY, EEG, ''savemode'', ''resave'');' e_load_study];
cb_savestudy2 = [ check '[STUDYTMP ALLEEGTMP LASTCOM] = pop_savestudy(STUDY, EEG);' e_load_study];
cb_clearstudy = 'LASTCOM = ''STUDY = []; CURRENTSTUDY = 0; ALLEEG = []; EEG=[]; CURRENTSET=[];''; eval(LASTCOM); eegh( LASTCOM ); eeglab redraw;';
cb_editoptions = [ nocheck 'if isfield(ALLEEG, ''nbchan''), LASTCOM = pop_editoptions(length([ ALLEEG.nbchan ]) >1);' ...
'else LASTCOM = pop_editoptions(0); end;' e_storeall_nh];
cb_plugin = [ nocheck 'if plugin_menu(PLUGINLIST) , close(findobj(''tag'', ''EEGLAB'')); eeglab redraw; end;' e_hist_nh ];
cb_saveh1 = [ nocheck 'LASTCOM = pop_saveh(EEG.history);' e_hist_nh];
cb_saveh2 = [ nocheck 'LASTCOM = pop_saveh(ALLCOM);' e_hist_nh];
cb_runsc = [ nocheck 'LASTCOM = pop_runscript;' e_hist ];
cb_quit = [ 'close(gcf); disp(''To save the EEGLAB command history >> pop_saveh(ALLCOM);'');' ...
'clear global EEG ALLEEG LASTCOM CURRENTSET;'];
cb_editset = [ check '[EEG LASTCOM] = pop_editset(EEG);' e_store];
cb_editeventf = [ checkevent '[EEG LASTCOM] = pop_editeventfield(EEG);' e_store];
cb_editeventv = [ checkevent '[EEG LASTCOM] = pop_editeventvals(EEG);' e_store];
cb_adjustevents= [ checkevent '[EEG LASTCOM] = pop_adjustevents(EEG);' e_store];
cb_comments = [ check '[EEG.comments LASTCOM] =pop_comments(EEG.comments, ''About this dataset'');' e_store];
cb_chanedit = [ 'disp(''IMPORTANT: After importing/modifying data channels, you must close'');' ...
'disp(''the channel editing window for the changes to take effect in EEGLAB.'');' ...
'disp(''TIP: Call this function directy from the prompt, ">> pop_chanedit([]);"'');' ...
'disp('' to convert between channel location file formats'');' ...
'[EEG TMPINFO TMP LASTCOM] = pop_chanedit(EEG); if ~isempty(LASTCOM), EEG = eeg_checkset(EEG, ''chanlocsize'');' ...
'clear TMPINFO TMP; EEG = eegh(LASTCOM, EEG);' storecall 'end; eeglab(''redraw'');'];
cb_select = [ check '[EEG LASTCOM] = pop_select(EEG);' e_newset];
cb_rmdat = [ checkevent '[EEG LASTCOM] = pop_rmdat(EEG);' e_newset];
cb_selectevent = [ checkevent '[EEG TMP LASTCOM] = pop_selectevent(EEG); clear TMP;' e_newset ];
cb_copyset = [ check '[ALLEEG EEG CURRENTSET LASTCOM] = pop_copyset(ALLEEG, CURRENTSET); eeglab(''redraw'');' e_hist_nh];
cb_mergeset = [ check '[EEG LASTCOM] = pop_mergeset(ALLEEG);' e_newset];
cb_resample = [ check '[EEG LASTCOM] = pop_resample(EEG);' e_newset];
cb_eegfilt = [ check '[EEG LASTCOM] = pop_eegfilt(EEG);' e_newset];
cb_interp = [ check '[EEG LASTCOM] = pop_interp(EEG); ' e_newset];
cb_reref = [ check '[EEG LASTCOM] = pop_reref(EEG);' e_newset];
cb_eegplot = [ checkcont '[LASTCOM] = pop_eegplot(EEG, 1);' e_hist];
cb_epoch = [ check '[EEG tmp LASTCOM] = pop_epoch(EEG); clear tmp;' e_newset check '[EEG LASTCOM] = pop_rmbase(EEG);' e_newset e_check_study ];
cb_rmbase = [ check '[EEG LASTCOM] = pop_rmbase(EEG);' e_newset];
cb_runica = [ check '[EEG LASTCOM] = pop_runica(EEG);' e_store e_check_study];
cb_subcomp = [ checkica '[EEG LASTCOM] = pop_subcomp(EEG);' e_newset];
%cb_chanrej = [ check 'pop_rejchan(EEG); LASTCOM = '''';' e_hist];
cb_chanrej = [ check '[EEG tmp1 tmp2 LASTCOM] = pop_rejchan(EEG); clear tmp1 tmp2;' e_hist];
cb_autorej = [ checkepoch '[EEG tmpp LASTCOM] = pop_autorej(EEG); clear tmpp;' e_hist];
cb_rejcont = [ check '[EEG tmp1 tmp2 LASTCOM] = pop_rejcont(EEG); clear tmp1 tmp2;' e_hist];
cb_rejmenu1 = [ check 'pop_rejmenu(EEG, 1); LASTCOM = '''';' e_hist];
cb_eegplotrej1 = [ check '[LASTCOM] = pop_eegplot(EEG, 1);' e_hist];
cb_eegthresh1 = [ checkepoch '[TMP LASTCOM] = pop_eegthresh(EEG, 1); clear TMP;' e_hist];
cb_rejtrend1 = [ checkepoch '[EEG LASTCOM] = pop_rejtrend(EEG, 1);' e_store];
cb_jointprob1 = [ checkepoch '[EEG LASTCOM] = pop_jointprob(EEG, 1);' e_store];
cb_rejkurt1 = [ checkepoch '[EEG LASTCOM] = pop_rejkurt(EEG, 1);' e_store];
cb_rejspec1 = [ checkepoch '[EEG Itmp LASTCOM] = pop_rejspec(EEG, 1); clear Itmp;' e_store];
cb_rejsup1 = [ checkepochica '[EEG LASTCOM] = eeg_rejsuperpose(EEG, 1,1,1,1,1,1,1,1); eegh(LASTCOM);' ...
'LASTCOM = ''EEG.reject.icarejmanual = EEG.reject.rejglobal;''; eval(LASTCOM);' e_store ];
cb_rejsup2 = [ checkepoch '[EEG LASTCOM] = eeg_rejsuperpose(EEG, 1,1,1,1,1,1,1,1); EEG = eegh(LASTCOM, EEG);' ...
'[EEG LASTCOM] = pop_rejepoch(EEG);' e_newset];
cb_selectcomps = [ checkicaplot '[EEG LASTCOM] = pop_selectcomps(EEG);' e_store];
cb_rejmenu2 = [ checkepochica 'pop_rejmenu(EEG, 0); LASTCOM ='''';' e_hist];
cb_eegplotrej2 = [ checkica '[LASTCOM] = pop_eegplot(EEG, 0);' e_hist];
cb_eegthresh2 = [ checkepochica '[TMP LASTCOM] = pop_eegthresh(EEG, 0); clear TMP;' e_hist];
cb_rejtrend2 = [ checkepochica '[EEG LASTCOM] = pop_rejtrend(EEG, 0);' e_store];
cb_jointprob2 = [ checkepochica '[EEG LASTCOM] = pop_jointprob(EEG, 0);' e_store];
cb_rejkurt2 = [ checkepochica '[EEG LASTCOM] = pop_rejkurt(EEG, 0);' e_store];
cb_rejspec2 = [ checkepochica '[EEG Itmp LASTCOM] = pop_rejspec(EEG, 1); clear Itmp;' e_store];
cb_rejsup3 = [ checkepochica '[EEG LASTCOM] = eeg_rejsuperpose(EEG, 0,1,1,1,1,1,1,1); eegh(LASTCOM);' ...
'LASTCOM = ''EEG.reject.rejmanual = EEG.reject.rejglobal;''; eval(LASTCOM);' e_store ];
cb_rejsup4 = [ checkepochica '[EEG LASTCOM] = eeg_rejsuperpose(EEG, 0,1,1,1,1,1,1,1); EEG = eegh(LASTCOM, EEG);' ...
'[EEG LASTCOM] = pop_rejepoch(EEG);' e_newset ];
cb_topoblank1 = [ checkplot 'LASTCOM = [''figure; topoplot([],EEG.chanlocs, ''''style'''', ''''blank'''', ' ...
'''''electrodes'''', ''''labelpoint'''', ''''chaninfo'''', EEG.chaninfo);'']; eval(LASTCOM);' e_hist];
cb_topoblank2 = [ checkplot 'LASTCOM = [''figure; topoplot([],EEG.chanlocs, ''''style'''', ''''blank'''', ' ...
'''''electrodes'''', ''''numpoint'''', ''''chaninfo'''', EEG.chaninfo);'']; eval(LASTCOM);' e_hist];
cb_eegplot1 = [ check 'LASTCOM = pop_eegplot(EEG, 1, 1, 1);' e_hist];
cb_spectopo1 = [ check 'LASTCOM = pop_spectopo(EEG, 1);' e_hist];
cb_prop1 = [ checkplot 'LASTCOM = pop_prop(EEG,1);' e_hist];
cb_erpimage1 = [ checkepoch 'LASTCOM = pop_erpimage(EEG, 1, eegh(''find'',''pop_erpimage(EEG,1''));' e_hist];
cb_timtopo = [ checkplot 'LASTCOM = pop_timtopo(EEG);' e_hist];
cb_plottopo = [ check 'LASTCOM = pop_plottopo(EEG);' e_hist];
cb_topoplot1 = [ checkplot 'LASTCOM = pop_topoplot(EEG, 1);' e_hist];
cb_headplot1 = [ checkplot '[EEG LASTCOM] = pop_headplot(EEG, 1);' e_store];
cb_comperp1 = [ checkepoch 'LASTCOM = pop_comperp(ALLEEG);' e_hist];
cb_eegplot2 = [ checkica '[LASTCOM] = pop_eegplot(EEG, 0, 1, 1);' e_hist];
cb_spectopo2 = [ checkicaplot 'LASTCOM = pop_spectopo(EEG, 0);' e_hist];
cb_topoplot2 = [ checkicaplot 'LASTCOM = pop_topoplot(EEG, 0);' e_hist];
cb_headplot2 = [ checkicaplot '[EEG LASTCOM] = pop_headplot(EEG, 0);' e_store];
cb_prop2 = [ checkicaplot 'LASTCOM = pop_prop(EEG,0);' e_hist];
cb_erpimage2 = [ checkepochica 'LASTCOM = pop_erpimage(EEG, 0, eegh(''find'',''pop_erpimage(EEG,0''));' e_hist];
cb_envtopo1 = [ checkica 'LASTCOM = pop_envtopo(EEG);' e_hist];
cb_envtopo2 = [ checkica 'if length(ALLEEG) == 1, error(''Need at least 2 datasets''); end; LASTCOM = pop_envtopo(ALLEEG);' e_hist];
cb_plotdata2 = [ checkepochica '[tmpeeg LASTCOM] = pop_plotdata(EEG, 0); clear tmpeeg;' e_hist];
cb_comperp2 = [ checkepochica 'LASTCOM = pop_comperp(ALLEEG, 0);' e_hist];
cb_signalstat1 = [ check 'LASTCOM = pop_signalstat(EEG, 1);' e_hist];
cb_signalstat2 = [ checkica 'LASTCOM = pop_signalstat(EEG, 0);' e_hist];
cb_eventstat = [ checkevent 'LASTCOM = pop_eventstat(EEG);' e_hist];
cb_timef1 = [ check 'LASTCOM = pop_newtimef(EEG, 1, eegh(''find'',''pop_newtimef(EEG,1''));' e_hist];
cb_crossf1 = [ check 'LASTCOM = pop_newcrossf(EEG, 1,eegh(''find'',''pop_newcrossf(EEG,1''));' e_hist];
cb_timef2 = [ checkica 'LASTCOM = pop_newtimef(EEG, 0, eegh(''find'',''pop_newtimef(EEG,0''));' e_hist];
cb_crossf2 = [ checkica 'LASTCOM = pop_newcrossf(EEG, 0,eegh(''find'',''pop_newcrossf(EEG,0''));' e_hist];
cb_study3 = [ nocheck '[STUDYTMP ALLEEGTMP LASTCOM] = pop_study(STUDY, ALLEEG, ''gui'', ''on'');' e_load_study];
cb_studydesign = [ nocheck '[STUDYTMP LASTCOM] = pop_studydesign(STUDY, ALLEEG); ALLEEGTMP = ALLEEG;' e_plot_study];
cb_precomp = [ nocheck '[STUDYTMP ALLEEGTMP LASTCOM] = pop_precomp(STUDY, ALLEEG);' e_plot_study];
cb_chanplot = [ nocheck '[STUDYTMP LASTCOM] = pop_chanplot(STUDY, ALLEEG); ALLEEGTMP=ALLEEG;' e_plot_study];
cb_precomp2 = [ nocheck '[STUDYTMP ALLEEGTMP LASTCOM] = pop_precomp(STUDY, ALLEEG, ''components'');' e_plot_study];
cb_preclust = [ nocheck '[STUDYTMP ALLEEGTMP LASTCOM] = pop_preclust(STUDY, ALLEEG);' e_plot_study];
cb_clust = [ nocheck '[STUDYTMP ALLEEGTMP LASTCOM] = pop_clust(STUDY, ALLEEG);' e_plot_study];
cb_clustedit = [ nocheck 'ALLEEGTMP = ALLEEG; [STUDYTMP LASTCOM] = pop_clustedit(STUDY, ALLEEG);' e_plot_study];
%
% % add STUDY plugin menus
% if exist('eegplugin_stderpimage')
% structure.uilist = { { } ...
% {'style' 'pushbutton' 'string' 'Plot ERPimage' 'Callback' 'stderpimageplugin_plot(''onecomp'', gcf);' } { } ...
% {'style' 'pushbutton' 'string' 'Plot ERPimage(s)' 'Callback' 'stderpimageplugin_plot(''oneclust'', gcf);' } };
% structure.geometry = { [1] [1 0.3 1] };
% arg = vararg2str( { structure } );
% cb_clustedit = [ nocheck 'ALLEEGTMP = ALLEEG; [STUDYTMP LASTCOM] = pop_clustedit(STUDY, ALLEEG, [], ' arg ');' e_load_study];
% end;
% menu definition
% ---------------
% defaults
% --------
% startup:on
% study:off
% chanloc:off
% epoch:on
% continuous:on
on = 'study:on';
onnostudy = '';
ondata = 'startup:off';
onepoch = 'startup:off;continuous:off';
ondatastudy = 'startup:off;study:on';
onchannel = 'startup:off;chanloc:on';
onepochchan = 'startup:off;continuous:off;chanloc:on';
onstudy = 'startup:off;epoch:off;continuous:off;study:on';
if ismatlab
W_MAIN = findobj('tag', 'EEGLAB');
EEGUSERDAT = get(W_MAIN, 'userdata');
set(W_MAIN, 'MenuBar', 'none');
file_m = uimenu( W_MAIN, 'Label', 'File' , 'userdata', on);
import_m = uimenu( file_m, 'Label', 'Import data' , 'userdata', onnostudy);
neuro_m = uimenu( import_m, 'Label', 'Using EEGLAB functions and plugins' , 'tag', 'import data' , 'userdata', onnostudy);
epoch_m = uimenu( file_m, 'Label', 'Import epoch info', 'tag', 'import epoch', 'userdata', onepoch);
event_m = uimenu( file_m, 'Label', 'Import event info', 'tag', 'import event', 'userdata', ondata);
exportm = uimenu( file_m, 'Label', 'Export' , 'tag', 'export' , 'userdata', ondata);
edit_m = uimenu( W_MAIN, 'Label', 'Edit' , 'userdata', ondatastudy);
tools_m = uimenu( W_MAIN, 'Label', 'Tools', 'tag', 'tools' , 'userdata', ondatastudy);
plot_m = uimenu( W_MAIN, 'Label', 'Plot', 'tag', 'plot' , 'userdata', ondata);
loc_m = uimenu( plot_m, 'Label', 'Channel locations' , 'userdata', onchannel);
std_m = uimenu( W_MAIN, 'Label', 'Study', 'tag', 'study' , 'userdata', onstudy);
set_m = uimenu( W_MAIN, 'Label', 'Datasets' , 'userdata', ondatastudy);
help_m = uimenu( W_MAIN, 'Label', 'Help' , 'userdata', on);
uimenu( neuro_m, 'Label', '(for more use menu File > Manage EEGLAB extensions)', 'userdata', 'enable:off');
uimenu( neuro_m, 'Label', 'From ASCII/float file or Matlab array' , 'CallBack', cb_importdata, 'separator', 'on');
%uimenu( neuro_m, 'Label', 'From Netstation .mff (FILE-IO toolbox)', 'CallBack', cb_fileio2, 'Separator', 'on');
% BIOSIG MENUS
% ------------
uimenu( neuro_m, 'Label', 'From Biosemi BDF file (BIOSIG toolbox)', 'CallBack' , cb_biosig, 'Separator', 'on');
uimenu( neuro_m, 'Label', 'From EDF/EDF+/GDF files (BIOSIG toolbox)', 'CallBack', cb_biosig);
uimenu( epoch_m, 'Label', 'From Matlab array or ASCII file' , 'CallBack', cb_importepoch);
uimenu( event_m, 'Label', 'From Matlab array or ASCII file' , 'CallBack', cb_importevent);
uimenu( event_m, 'Label', 'From data channel' , 'CallBack', cb_chanevent);
uimenu( event_m, 'Label', 'From Presentation .LOG file' , 'CallBack', cb_importpres);
uimenu( event_m, 'Label', 'From E-Prime ASCII (text) file' , 'CallBack', cb_importevent);
uimenu( event_m, 'Label', 'From ERPLAB text files' , 'CallBack', cb_importerplab);
uimenu( exportm, 'Label', '(for more use menu File > Manage EEGLAB extensions)', 'userdata', 'enable:off');
uimenu( exportm, 'Label', 'Data and ICA activity to text file' , 'CallBack', cb_export, 'separator', 'on');
uimenu( exportm, 'Label', 'Weight matrix to text file' , 'CallBack', cb_expica1);
uimenu( exportm, 'Label', 'Inverse weight matrix to text file' , 'CallBack', cb_expica2);
uimenu( exportm, 'Label', 'Events to text file' , 'CallBack', cb_expevents);
uimenu( exportm, 'Label', 'Data to EDF/BDF/GDF file' , 'CallBack', cb_expdata, 'separator', 'on');
uimenu( file_m, 'Label', 'Load existing dataset' , 'userdata', onnostudy, 'CallBack', cb_loadset, 'Separator', 'on');
uimenu( file_m, 'Label', 'Save current dataset(s)' , 'userdata', ondatastudy, 'CallBack', cb_saveset);
uimenu( file_m, 'Label', 'Save current dataset as' , 'userdata', ondata, 'CallBack', cb_savesetas);
uimenu( file_m, 'Label', 'Clear dataset(s)' , 'userdata', ondata, 'CallBack', cb_delset);
std2_m = uimenu( file_m, 'Label', 'Create study' , 'userdata', on , 'Separator', 'on');
uimenu( std2_m, 'Label', 'Using all loaded datasets' , 'userdata', ondata , 'Callback', cb_study1);
uimenu( std2_m, 'Label', 'Browse for datasets' , 'userdata', on , 'Callback', cb_study2);
uimenu( std2_m, 'Label', 'Simple ERP STUDY' , 'userdata', on , 'Callback', cb_studyerp);
uimenu( file_m, 'Label', 'Load existing study' , 'userdata', on , 'CallBack', cb_loadstudy,'Separator', 'on' );
uimenu( file_m, 'Label', 'Save current study' , 'userdata', onstudy, 'CallBack', cb_savestudy1);
uimenu( file_m, 'Label', 'Save current study as' , 'userdata', onstudy, 'CallBack', cb_savestudy2);
uimenu( file_m, 'Label', 'Clear study / Clear all' , 'userdata', ondatastudy, 'CallBack', cb_clearstudy);
uimenu( file_m, 'Label', 'Memory and other options' , 'userdata', on , 'CallBack', cb_editoptions, 'Separator', 'on');
hist_m = uimenu( file_m, 'Label', 'History scripts' , 'userdata', on , 'Separator', 'on');
uimenu( hist_m, 'Label', 'Save dataset history script' , 'userdata', ondata , 'CallBack', cb_saveh1);
uimenu( hist_m, 'Label', 'Save session history script' , 'userdata', ondatastudy, 'CallBack', cb_saveh2);
uimenu( hist_m, 'Label', 'Run script' , 'userdata', on , 'CallBack', cb_runsc);
if ~isdeployed
uimenu( file_m, 'Label', 'Manage EEGLAB extensions' , 'userdata', on, 'CallBack', cb_plugin);
end
uimenu( file_m, 'Label', 'Quit' , 'userdata', on , 'CallBack', cb_quit, 'Separator', 'on');
uimenu( edit_m, 'Label', 'Dataset info' , 'userdata', ondata, 'CallBack', cb_editset);
uimenu( edit_m, 'Label', 'Event fields' , 'userdata', ondata, 'CallBack', cb_editeventf);
uimenu( edit_m, 'Label', 'Event values' , 'userdata', ondata, 'CallBack', cb_editeventv);
uimenu( edit_m, 'Label', 'Adjust event latencies' , 'userdata', ondata, 'CallBack', cb_adjustevents);
uimenu( edit_m, 'Label', 'About this dataset' , 'userdata', ondata, 'CallBack', cb_comments);
uimenu( edit_m, 'Label', 'Channel locations' , 'userdata', ondata, 'CallBack', cb_chanedit);
uimenu( edit_m, 'Label', 'Select data' , 'userdata', ondata, 'CallBack', cb_select, 'Separator', 'on', 'userdata', 'study:on');
uimenu( edit_m, 'Label', 'Select data using events' , 'userdata', ondata, 'CallBack', cb_rmdat);
uimenu( edit_m, 'Label', 'Select epochs or events' , 'userdata', ondata, 'CallBack', cb_selectevent);
uimenu( edit_m, 'Label', 'Copy current dataset' , 'userdata', ondata, 'CallBack', cb_copyset, 'Separator', 'on');
uimenu( edit_m, 'Label', 'Append datasets' , 'userdata', ondata, 'CallBack', cb_mergeset);
uimenu( edit_m, 'Label', 'Delete dataset(s) from memory' , 'userdata', ondata, 'CallBack', cb_delset);
uimenu( tools_m, 'Label', 'Change sampling rate' , 'userdata', ondatastudy, 'CallBack', cb_resample);
filter_m = uimenu( tools_m, 'Label', 'Filter the data' , 'userdata', ondatastudy, 'tag', 'filter');
uimenu( filter_m, 'Label', 'Basic FIR filter (legacy)' , 'userdata', ondatastudy, 'CallBack', cb_eegfilt);
uimenu( tools_m, 'Label', 'Re-reference' , 'userdata', ondata, 'CallBack', cb_reref, 'userdata', 'study:on');
uimenu( tools_m, 'Label', 'Interpolate electrodes' , 'userdata', ondata, 'CallBack', cb_interp);
uimenu( tools_m, 'Label', 'Reject continuous data by eye' , 'userdata', ondata, 'CallBack', cb_eegplot);
uimenu( tools_m, 'Label', 'Extract epochs' , 'userdata', ondata, 'CallBack', cb_epoch, 'Separator', 'on', 'userdata', 'study:on');
uimenu( tools_m, 'Label', 'Remove baseline' , 'userdata', ondatastudy, 'CallBack', cb_rmbase);
uimenu( tools_m, 'Label', 'Run ICA' , 'userdata', ondatastudy, 'CallBack', cb_runica, 'foregroundcolor', 'b', 'Separator', 'on');
uimenu( tools_m, 'Label', 'Remove components' , 'userdata', ondata, 'CallBack', cb_subcomp);
uimenu( tools_m, 'Label', 'Automatic channel rejection' , 'userdata', ondata, 'CallBack', cb_chanrej, 'Separator', 'on');
uimenu( tools_m, 'Label', 'Automatic continuous rejection' , 'userdata', ondata, 'CallBack', cb_rejcont);
uimenu( tools_m, 'Label', 'Automatic epoch rejection' , 'userdata', onepoch, 'CallBack', cb_autorej);
rej_m1 = uimenu( tools_m, 'Label', 'Reject data epochs' , 'userdata', onepoch);
rej_m2 = uimenu( tools_m, 'Label', 'Reject data using ICA' , 'userdata', ondata );
uimenu( rej_m1, 'Label', 'Reject data (all methods)' , 'userdata', onepoch, 'CallBack', cb_rejmenu1);
uimenu( rej_m1, 'Label', 'Reject by inspection' , 'userdata', onepoch, 'CallBack', cb_eegplotrej1);
uimenu( rej_m1, 'Label', 'Reject extreme values' , 'userdata', onepoch, 'CallBack', cb_eegthresh1);
uimenu( rej_m1, 'Label', 'Reject by linear trend/variance' , 'userdata', onepoch, 'CallBack', cb_rejtrend1);
uimenu( rej_m1, 'Label', 'Reject by probability' , 'userdata', onepoch, 'CallBack', cb_jointprob1);
uimenu( rej_m1, 'Label', 'Reject by kurtosis' , 'userdata', onepoch, 'CallBack', cb_rejkurt1);
uimenu( rej_m1, 'Label', 'Reject by spectra' , 'userdata', onepoch, 'CallBack', cb_rejspec1);
uimenu( rej_m1, 'Label', 'Export marks to ICA reject' , 'userdata', onepoch, 'CallBack', cb_rejsup1, 'separator', 'on');
uimenu( rej_m1, 'Label', 'Reject marked epochs' , 'userdata', onepoch, 'CallBack', cb_rejsup2, 'separator', 'on', 'foregroundcolor', 'b');
uimenu( rej_m2, 'Label', 'Reject components by map' , 'userdata', ondata , 'CallBack', cb_selectcomps);
uimenu( rej_m2, 'Label', 'Reject data (all methods)' , 'userdata', onepoch, 'CallBack', cb_rejmenu2, 'Separator', 'on');
uimenu( rej_m2, 'Label', 'Reject by inspection' , 'userdata', onepoch, 'CallBack', cb_eegplotrej2);
uimenu( rej_m2, 'Label', 'Reject extreme values' , 'userdata', onepoch, 'CallBack', cb_eegthresh2);
uimenu( rej_m2, 'Label', 'Reject by linear trend/variance' , 'userdata', onepoch, 'CallBack', cb_rejtrend2);
uimenu( rej_m2, 'Label', 'Reject by probability' , 'userdata', onepoch, 'CallBack', cb_jointprob2);
uimenu( rej_m2, 'Label', 'Reject by kurtosis' , 'userdata', onepoch, 'CallBack', cb_rejkurt2);
uimenu( rej_m2, 'Label', 'Reject by spectra' , 'userdata', onepoch, 'CallBack', cb_rejspec2);
uimenu( rej_m2, 'Label', 'Export marks to data reject' , 'userdata', onepoch, 'CallBack', cb_rejsup3, 'separator', 'on');
uimenu( rej_m2, 'Label', 'Reject marked epochs' , 'userdata', onepoch, 'CallBack', cb_rejsup4, 'separator', 'on', 'foregroundcolor', 'b');
uimenu( loc_m, 'Label', 'By name' , 'userdata', onchannel, 'CallBack', cb_topoblank1);
uimenu( loc_m, 'Label', 'By number' , 'userdata', onchannel, 'CallBack', cb_topoblank2);
uimenu( plot_m, 'Label', 'Channel data (scroll)' , 'userdata', ondata , 'CallBack', cb_eegplot1, 'Separator', 'on');
uimenu( plot_m, 'Label', 'Channel spectra and maps' , 'userdata', ondata , 'CallBack', cb_spectopo1);
uimenu( plot_m, 'Label', 'Channel properties' , 'userdata', ondata , 'CallBack', cb_prop1);
uimenu( plot_m, 'Label', 'Channel ERP image' , 'userdata', onepoch, 'CallBack', cb_erpimage1);
ERP_m = uimenu( plot_m, 'Label', 'Channel ERPs' , 'userdata', onepoch);
uimenu( ERP_m, 'Label', 'With scalp maps' , 'CallBack', cb_timtopo);
uimenu( ERP_m, 'Label', 'In scalp/rect. array' , 'CallBack', cb_plottopo);
topo_m = uimenu( plot_m, 'Label', 'ERP map series' , 'userdata', onepochchan);
uimenu( topo_m, 'Label', 'In 2-D' , 'CallBack', cb_topoplot1);
uimenu( topo_m, 'Label', 'In 3-D' , 'CallBack', cb_headplot1);
uimenu( plot_m, 'Label', 'Sum/Compare ERPs' , 'userdata', onepoch, 'CallBack', cb_comperp1);
uimenu( plot_m, 'Label', 'Component activations (scroll)' , 'userdata', ondata , 'CallBack', cb_eegplot2,'Separator', 'on');
uimenu( plot_m, 'Label', 'Component spectra and maps' , 'userdata', ondata , 'CallBack', cb_spectopo2);
tica_m = uimenu( plot_m, 'Label', 'Component maps' , 'userdata', onchannel);
uimenu( tica_m, 'Label', 'In 2-D' , 'CallBack', cb_topoplot2);
uimenu( tica_m, 'Label', 'In 3-D' , 'CallBack', cb_headplot2);
uimenu( plot_m, 'Label', 'Component properties' , 'userdata', ondata , 'CallBack', cb_prop2);
uimenu( plot_m, 'Label', 'Component ERP image' , 'userdata', onepoch, 'CallBack', cb_erpimage2);
ERPC_m = uimenu( plot_m, 'Label', 'Component ERPs' , 'userdata', onepoch);
uimenu( ERPC_m, 'Label', 'With component maps' , 'CallBack', cb_envtopo1);
uimenu( ERPC_m, 'Label', 'With comp. maps (compare)' , 'CallBack', cb_envtopo2);
uimenu( ERPC_m, 'Label', 'In rectangular array' , 'CallBack', cb_plotdata2);
uimenu( plot_m, 'Label', 'Sum/Compare comp. ERPs' , 'userdata', onepoch, 'CallBack', cb_comperp2);
stat_m = uimenu( plot_m, 'Label', 'Data statistics', 'Separator', 'on', 'userdata', ondata );
uimenu( stat_m, 'Label', 'Channel statistics' , 'CallBack', cb_signalstat1);
uimenu( stat_m, 'Label', 'Component statistics' , 'CallBack', cb_signalstat2);
uimenu( stat_m, 'Label', 'Event statistics' , 'CallBack', cb_eventstat);
spec_m = uimenu( plot_m, 'Label', 'Time-frequency transforms', 'Separator', 'on', 'userdata', ondata);
uimenu( spec_m, 'Label', 'Channel time-frequency' , 'CallBack', cb_timef1);
uimenu( spec_m, 'Label', 'Channel cross-coherence' , 'CallBack', cb_crossf1);
uimenu( spec_m, 'Label', 'Component time-frequency' , 'CallBack', cb_timef2,'Separator', 'on');
uimenu( spec_m, 'Label', 'Component cross-coherence' , 'CallBack', cb_crossf2);
uimenu( std_m, 'Label', 'Edit study info' , 'userdata', onstudy, 'CallBack', cb_study3);
uimenu( std_m, 'Label', 'Select/Edit study design(s)' , 'userdata', onstudy, 'CallBack', cb_studydesign);
uimenu( std_m, 'Label', 'Precompute channel measures' , 'userdata', onstudy, 'CallBack', cb_precomp, 'separator', 'on');
uimenu( std_m, 'Label', 'Plot channel measures' , 'userdata', onstudy, 'CallBack', cb_chanplot);
uimenu( std_m, 'Label', 'Precompute component measures' , 'userdata', onstudy, 'CallBack', cb_precomp2, 'separator', 'on');
clust_m = uimenu( std_m, 'Label', 'PCA clustering (original)' , 'userdata', onstudy);
uimenu( clust_m, 'Label', 'Build preclustering array' , 'userdata', onstudy, 'CallBack', cb_preclust);
uimenu( clust_m, 'Label', 'Cluster components' , 'userdata', onstudy, 'CallBack', cb_clust);
uimenu( std_m, 'Label', 'Edit/plot clusters' , 'userdata', onstudy, 'CallBack', cb_clustedit);
if ~isdeployed
%newerVersionMenu = uimenu( help_m, 'Label', 'Upgrade to the Latest Version' , 'userdata', on, 'ForegroundColor', [0.6 0 0]);
uimenu( help_m, 'Label', 'About EEGLAB' , 'userdata', on, 'CallBack', 'pophelp(''eeglab'');');
uimenu( help_m, 'Label', 'About EEGLAB help' , 'userdata', on, 'CallBack', 'pophelp(''eeg_helphelp'');');
uimenu( help_m, 'Label', 'EEGLAB menus' , 'userdata', on, 'CallBack', 'pophelp(''eeg_helpmenu'');','separator','on');
help_1 = uimenu( help_m, 'Label', 'EEGLAB functions', 'userdata', on);
uimenu( help_1, 'Label', 'Admin. functions' , 'userdata', on, 'Callback', 'pophelp(''eeg_helpadmin'');');
uimenu( help_1, 'Label', 'Interactive pop_ functions' , 'userdata', on, 'Callback', 'pophelp(''eeg_helppop'');');
uimenu( help_1, 'Label', 'Signal processing functions' , 'userdata', on, 'Callback', 'pophelp(''eeg_helpsigproc'');');
uimenu( help_1, 'Label', 'Group data (STUDY) functions' , 'userdata', on, 'Callback', 'pophelp(''eeg_helpstudy'');');
uimenu( help_1, 'Label', 'Time-frequency functions' , 'userdata', on, 'Callback', 'pophelp(''eeg_helptimefreq'');');
uimenu( help_1, 'Label', 'Statistical functions' , 'userdata', on, 'Callback', 'pophelp(''eeg_helpstatistics'');');
uimenu( help_1, 'Label', 'Graphic interface builder functions' , 'userdata', on, 'Callback', 'pophelp(''eeg_helpgui'');');
uimenu( help_1, 'Label', 'Misc. command line functions' , 'userdata', on, 'Callback', 'pophelp(''eeg_helpmisc'');');
uimenu( help_m, 'Label', 'EEGLAB license' , 'userdata', on, 'CallBack', 'pophelp(''eeglablicense.txt'', 1);');
else
uimenu( help_m, 'Label', 'About EEGLAB' , 'userdata', on, 'CallBack', 'abouteeglab;');
uimenu( help_m, 'Label', 'EEGLAB license' , 'userdata', on, 'CallBack', 'pophelp(''eeglablicense.txt'', 1);');
end
uimenu( help_m, 'Label', 'EEGLAB tutorial' , 'userdata', on, 'CallBack', 'tutorial;', 'Separator', 'on');
uimenu( help_m, 'Label', 'Email the EEGLAB team' , 'userdata', on, 'CallBack', 'web(''mailto:eeglab@sccn.ucsd.edu'');');
end
statusconnection = 1;
if isdeployed
funcname = { 'eegplugin_dipfit' ...
'eegplugin_firfilt' ...
'eegplugin_musemonitor' };
for indf = 1:length(funcname)
try
vers = feval(funcname{indf}, gcf, trystrs, catchstrs);
disp(['EEGLAB: adding "' vers '" plugin' ]);
catch
feval(funcname{indf}, gcf, trystrs, catchstrs);
disp(['EEGLAB: adding plugin function "' funcname{indf} '"' ]);
end
end
else
pluginlist = [];
plugincount = 1;
p = mywhich('eeglab.m');
p = p(1:findstr(p,'eeglab.m')-1);
if strcmpi(p, './') || strcmpi(p, '.\'), p = [ pwd filesep ]; end
% scan plugin folder
% ------------------
dircontent = dir(fullfile(p, 'plugins'));
dircontent = { dircontent.name };
pluginstats = [];
if option_checkversion && ismatlab
disp('Retrieving plugin versions from server...');
[stats, statusconnection] = plugin_urlread('http://sccn.ucsd.edu/eeglab/plugin_uploader/plugin_getcountall_withversion.php');
if statusconnection == 1
stats = textscan(stats, '%s%d%s%s');
pluginstats.name = stats{1};
pluginstats.version = stats{3};
end
end
for index = 1:length(dircontent)
% find function
% -------------
funcname = '';
pluginVersion = [];
if exist([p 'plugins' filesep dircontent{index}]) == 7
if ~strcmpi(dircontent{index}, '.') && ~strcmpi(dircontent{index}, '..')
newpath = [ 'plugins' filesep dircontent{index} ];
tmpdir = dir([ p 'plugins' filesep dircontent{index} filesep 'eegplugin*.m' ]);
addpathifnotinlist(fullfile(eeglabpath, newpath));
[ pluginName pluginVersion ] = parsepluginname(dircontent{index});
if ~isempty(tmpdir)
%myaddpath(eeglabpath, tmpdir(1).name, newpath);
funcname = tmpdir(1).name(1:end-2);
end
% special case of subfolder for Fieldtrip
% ---------------------------------------
if ~isempty(findstr(lower(dircontent{index}), 'fieldtrip'))
addpathifnotexist( fullfile(eeglabpath, newpath, 'compat') , 'electrodenormalize' );
addpathifnotexist( fullfile(eeglabpath, newpath, 'forward'), 'ft_sourcedepth.m');
addpathifnotexist( fullfile(eeglabpath, newpath, 'utilities'), 'ft_datatype.m');
ptopoplot = fileparts(mywhich('cbar'));
ptopoplot2 = fileparts(mywhich('topoplot'));
if ~isequal(ptopoplot, ptopoplot2)
addpath(ptopoplot);
end
end
% special case of subfolder for BIOSIG
% ------------------------------------
if ~isempty(findstr(lower(dircontent{index}), 'biosig')) && isempty(findstr(lower(dircontent{index}), 'biosigplot'))
addpathifnotexist( fullfile(eeglabpath, newpath, 'biosig', 't200_FileAccess'), 'sopen.m');
addpathifnotexist( fullfile(eeglabpath, newpath, 'biosig', 't250_ArtifactPreProcessingQualityControl'), 'regress_eog.m' );
addpathifnotexist( fullfile(eeglabpath, newpath, 'biosig', 'doc'), 'DecimalFactors.txt');
end
end
else
if ~isempty(findstr(dircontent{index}, 'eegplugin')) && dircontent{index}(end) == 'm'
funcname = dircontent{index}(1:end-2); % remove .m
[ pluginName pluginVersion ] = parsepluginname(dircontent{index}(10:end-2));
end
end
% execute function
% ----------------
if ~isempty(pluginVersion) || ~isempty(funcname)
if isempty(funcname)
disp([ 'EEGLAB: adding "' pluginName '" to the path; subfolders (if any) might be missing from the path' ]);
pluginlist(plugincount).plugin = pluginName;
pluginlist(plugincount).version = pluginVersion;
pluginlist(plugincount).foldername = dircontent{index};
pluginlist(plugincount).status = 'ok';
plugincount = plugincount+1;
else
pluginlist(plugincount).plugin = pluginName;
pluginlist(plugincount).version = pluginVersion;
vers2 = '';
status = 'ok';
try,
%eval( [ 'vers2 =' funcname '(gcf, trystrs, catchstrs);' ]);
vers2 = feval(funcname, gcf, trystrs, catchstrs);
[~, vers2] = parsepluginname(vers2);
catch
try,
eval( [ funcname '(gcf, trystrs, catchstrs)' ]);
catch
disp([ 'EEGLAB: error while adding plugin "' funcname '"' ] );
disp([ ' ' lasterr] );
status = 'error';
end
end
if isempty(pluginlist(plugincount).version)
pluginlist(plugincount).version = vers2;
elseif ~isempty(vers2)
if ~isequal(pluginlist(plugincount).version, vers2)
fprintf('WARNING: for plugin "%s" vesion in the folder name "%s" and in the eegplugin_ file "%s" differ\n', pluginlist(plugincount).plugin, pluginlist(plugincount).version,vers2);
end
end
pluginlist(plugincount).funcname = funcname(10:end);
pluginlist(plugincount).foldername = dircontent{index};
if length(pluginlist(plugincount).funcname) > 1 && pluginlist(plugincount).funcname(1) == '_'
pluginlist(plugincount).funcname(1) = [];
end
if strcmpi(status, 'ok')
vers = pluginlist(plugincount).version; % version
if isempty(vers), vers = '?'; end