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Add Various clustering/binning options #11

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3 tasks done
Joon-Klaps opened this issue Aug 4, 2023 · 1 comment
Closed
3 tasks done

Add Various clustering/binning options #11

Joon-Klaps opened this issue Aug 4, 2023 · 1 comment
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enhancement New feature or request
Milestone
Release 0.1.1

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@Joon-Klaps
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Joon-Klaps commented Aug 4, 2023 •
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Description of feature

Include the additional option of

  • mmseqs cluster
  • sourmash cluster -> mash
  • vRhyme

To cluster contigs
@Joon-Klaps Joon-Klaps added the enhancement New feature or request label Aug 4, 2023
@Joon-Klaps Joon-Klaps added this to the Release 0.1.0 milestone Aug 4, 2023
@Joon-Klaps
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Have a look at https://github.com/klamkiew/viralclust to see its strategy.

@Joon-Klaps Joon-Klaps changed the title Add option mmseqs_cluster Add option mmseqs_cluster sourmash Oct 19, 2023
@Joon-Klaps Joon-Klaps changed the title Add option mmseqs_cluster sourmash Add Various clustering/binning options Nov 21, 2023
@Joon-Klaps Joon-Klaps mentioned this issue Nov 21, 2023
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enhancement New feature or request
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@Joon-Klaps