/
three_dimensional_ocean.jl
2631 lines (2167 loc) · 93.6 KB
/
three_dimensional_ocean.jl
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### A Pluto.jl notebook ###
# v0.19.40
using Markdown
using InteractiveUtils
# ╔═╡ 16eab80b-325b-43bd-8bda-6b9ed27513a8
begin
using IndividualDisplacements, DataFrames, CairoMakie, OceanStateEstimation, NetCDF
p0=joinpath(dirname(pathof(IndividualDisplacements)),"..","examples")
f0=joinpath(p0,"worldwide","OCCA_FlowFields.jl")
include(f0)
"Done with loading packages"
end
# ╔═╡ 68c92218-40d3-11ec-0397-1747ac61c311
md"""# Three Dimensional Ocean Circulation
Advect particles with climatological mean flow in three dimensions starting from a selected depth level (e.g. `k=10` for 95 m) and region using a near-global ocean state estimate ([OCCA](https://doi.org/10.1175/2009JPO4043.1) which is here repeated for two years. For additional documentation e.g. see : [1](https://JuliaClimate.github.io/MeshArrays.jl/dev/), [2](https://JuliaClimate.github.io/IndividualDisplacements.jl/dev/), [3](https://docs.juliadiffeq.org/latest/solvers/ode_solve.html), [4](https://en.wikipedia.org/wiki/Displacement_(vector))
"""
#
# ╔═╡ 44346351-f249-4376-b002-8147755ed489
md"""## Initialize Data Structures"""
# ╔═╡ 66c95828-227c-4db5-a6f1-3e3004a99785
begin
𝑃,𝐷=OCCA_FlowFields.setup(nmax=5)
"Done with FlowFields"
end
# ╔═╡ c21d725b-7adf-4918-bddd-39f225ea9858
begin
nf=100; lo=(-160.0,-150.0); la=(30.0,40.0); level=2.5;
df=OCCA_FlowFields.initial_positions(𝐷.Γ, nf, lo, la, level)
"Done with initial positions"
end
# ╔═╡ f199f321-976a-4ccd-a003-140211aa67fe
begin
𝐼=Individuals(𝑃,df.x,df.y,df.z,df.f,
(🔴=OCCA_FlowFields.custom🔴,🔧=OCCA_FlowFields.custom🔧, 𝐷=𝐷))
"Done with Individuals"
end
# ╔═╡ 00464caa-fab2-4fd2-b39b-177e505d6d89
md"""## Compute Displacements"""
# ╔═╡ 938fdaa8-357d-477e-8fa2-e6da53806242
begin
𝑇=(0.0,10*86400.0)
∫!(𝐼,𝑇)
end
# ╔═╡ 09d31a7b-f411-429f-b42b-4c5cd0e5a420
md"""## Visualize Displacements"""
# ╔═╡ 8e371f54-d7f7-4f59-a2e1-9f673486f1fa
plot(𝐼)
# ╔═╡ a6f4b5a0-7818-41a6-a4e5-30d80a727625
"""
plot(𝐼::Individuals)
Plot the initial and final positions as scatter plot in `lon,lat` or `x,y` plane.
"""
function plot(𝐼::Individuals)
🔴_by_t = DataFrames.groupby(𝐼.🔴, :t)
set_theme!(theme_light())
fig=Figure(resolution = (900, 600))
try
a = Axis(fig[1, 1],xlabel="longitude",ylabel="latitude")
scatter!(a,🔴_by_t[1].lon,🔴_by_t[1].lat,color=:green2)
scatter!(a,🔴_by_t[end].lon,🔴_by_t[end].lat,color=:red)
catch
a = Axis(fig[1, 1],xlabel="longitude",ylabel="latitude")
scatter!(a,🔴_by_t[1].x,🔴_by_t[1].y,color=:green2)
scatter!(a,🔴_by_t[end].x,🔴_by_t[end].y,color=:red)
end
return fig
end
# ╔═╡ 00000000-0000-0000-0000-000000000001
PLUTO_PROJECT_TOML_CONTENTS = """
[deps]
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NetCDF = "30363a11-5582-574a-97bb-aa9a979735b9"
OceanStateEstimation = "891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c"
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