Skip to content

Latest commit

 

History

History
62 lines (41 loc) · 1.36 KB

umls.md

File metadata and controls

62 lines (41 loc) · 1.36 KB
CurrentModule = BioMedQuery.UMLS

Search the Unified Medical Language System (UMLS), for more details visit the REST API.

Searching the UMLS requires approved credentials. You can sign up [here]](https://uts.nlm.nih.gov//license.html)

##Import

using BioMedQuery.UMLS

Credentials

Credentials

Search the UMLS

search_umls(c::Credentials, query)

Best match CUI

 best_match_cui(all_results)

Semantic types of a CUI

get_semantic_type(c::Credentials, cui)

Semantic Network Database

populate_net_mysql(config; sn_version, mysql_version)

Schema

The schema of the MySQL database of the semantic network is the following:

Alt

###Note:

The previous function uses the original scripts that are part of MetamorphoSys (part of the mmsys.zip downloaded here), and the current Relational ASCII (CVS) files for the UMLS Semantic Network (obtained here)

For useful information on loading your Semantic Network files into an Oracle or MySQL database, please consult the on-line documentation at:

http://www.nlm.nih.gov/research/umls/implementation_resources/scripts/index.html