examples/logistic_regression.ipynb

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     "input": [
      "using DataFrames\n",
      "using RDatasets\n",
      "using Convex\n",
      "using SCS"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 2
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     "input": [
      "# we'll use iris data\n",
      "# predict whether the iris species is versicolor using the sepal length and width and petal length and width\n",
      "iris = dataset(\"datasets\", \"iris\")\n",
      "## outcome variable: +1 for versicolor, -1 otherwise\n",
      "iris[:Y] = [species == \"versicolor\" ? 1.0 : -1.0 for species in iris[:Species]]\n",
      "Y = array(iris[:Y])\n",
      "## create data matrix with one column for each feature (first column corresponds to offset)\n",
      "X = [ones(size(iris, 1)) iris[:SepalLength] iris[:SepalWidth] iris[:PetalLength] iris[:PetalWidth]];"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 6
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     "cell_type": "code",
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     "input": [
      "# solve the logistic regression problem\n",
      "n, p = size(X)\n",
      "beta = Variable(p)\n",
      "problem = minimize(logisticloss(-Y.*(X*beta)))\n",
      "\n",
      "solve!(problem, SCSSolver(verbose=false))"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 7
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     "cell_type": "code",
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     "input": [
      "# let's see how well the model fits\n",
      "using Gadfly\n",
      "perm = Base.Sort.sortperm(vec(X*beta.value))\n",
      "set_default_plot_size(25cm, 12cm)\n",
      "plot(layer(x=1:n,y=(Y[perm]+1)/2,Geom.point),layer(x=1:n,y=logistic(X*beta.value)[perm],Geom.line))"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
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        "{amount:d,amount2:0.5-d/2})};a.filter.contrast.toString=function(){return this()}});return C});\n",
        "\n",
        "]]> </script>\n",
        "<script> <![CDATA[\n",
        "\n",
        "(function (glob, factory) {\n",
        "    // AMD support\n",
        "    if (typeof define === \"function\" && define.amd) {\n",
        "        // Define as an anonymous module\n",
        "        define(\"Gadfly\", [\"Snap.svg\"], function (Snap) {\n",
        "            return factory(Snap);\n",
        "        });\n",
        "    } else {\n",
        "        // Browser globals (glob is window)\n",
        "        // Snap adds itself to window\n",
        "        glob.Gadfly = factory(glob.Snap);\n",
        "    }\n",
        "}(this, function (Snap) {\n",
        "\n",
        "var Gadfly = {};\n",
        "\n",
        "// Get an x/y coordinate value in pixels\n",
        "var xPX = function(fig, x) {\n",
        "    var client_box = fig.node.getBoundingClientRect();\n",
        "    return x * fig.node.viewBox.baseVal.width / client_box.width;\n",
        "};\n",
        "\n",
        "var yPX = function(fig, y) {\n",
        "    var client_box = fig.node.getBoundingClientRect();\n",
        "    return y * fig.node.viewBox.baseVal.height / client_box.height;\n",
        "};\n",
        "\n",
        "\n",
        "Snap.plugin(function (Snap, Element, Paper, global) {\n",
        "    // Traverse upwards from a snap element to find and return the first\n",
        "    // note with the \"plotroot\" class.\n",
        "    Element.prototype.plotroot = function () {\n",
        "        var element = this;\n",
        "        while (!element.hasClass(\"plotroot\") && element.parent() != null) {\n",
        "            element = element.parent();\n",
        "        }\n",
        "        return element;\n",
        "    };\n",
        "\n",
        "    Element.prototype.svgroot = function () {\n",
        "        var element = this;\n",
        "        while (element.node.nodeName != \"svg\" && element.parent() != null) {\n",
        "            element = element.parent();\n",
        "        }\n",
        "        return element;\n",
        "    };\n",
        "\n",
        "    Element.prototype.plotbounds = function () {\n",
        "        var root = this.plotroot()\n",
        "        var bbox = root.select(\".guide.background\").node.getBBox();\n",
        "        return {\n",
        "            x0: bbox.x,\n",
        "            x1: bbox.x + bbox.width,\n",
        "            y0: bbox.y,\n",
        "            y1: bbox.y + bbox.height\n",
        "        };\n",
        "    };\n",
        "\n",
        "    Element.prototype.plotcenter = function () {\n",
        "        var root = this.plotroot()\n",
        "        var bbox = root.select(\".guide.background\").node.getBBox();\n",
        "        return {\n",
        "            x: bbox.x + bbox.width / 2,\n",
        "            y: bbox.y + bbox.height / 2\n",
        "        };\n",
        "    };\n",
        "\n",
        "    // Emulate IE style mouseenter/mouseleave events, since Microsoft always\n",
        "    // does everything right.\n",
        "    // See: http://www.dynamic-tools.net/toolbox/isMouseLeaveOrEnter/\n",
        "    var events = [\"mouseenter\", \"mouseleave\"];\n",
        "\n",
        "    for (i in events) {\n",
        "        (function (event_name) {\n",
        "            var event_name = events[i];\n",
        "            Element.prototype[event_name] = function (fn, scope) {\n",
        "                if (Snap.is(fn, \"function\")) {\n",
        "                    var fn2 = function (event) {\n",
        "                        if (event.type != \"mouseover\" && event.type != \"mouseout\") {\n",
        "                            return;\n",
        "                        }\n",
        "\n",
        "                        var reltg = event.relatedTarget ? event.relatedTarget :\n",
        "                            event.type == \"mouseout\" ? event.toElement : event.fromElement;\n",
        "                        while (reltg && reltg != this.node) reltg = reltg.parentNode;\n",
        "\n",
        "                        if (reltg != this.node) {\n",
        "                            return fn.apply(this, event);\n",
        "                        }\n",
        "                    };\n",
        "\n",
        "                    if (event_name == \"mouseenter\") {\n",
        "                        this.mouseover(fn2, scope);\n",
        "                    } else {\n",
        "                        this.mouseout(fn2, scope);\n",
        "                    }\n",
        "                }\n",
        "                return this;\n",
        "            };\n",
        "        })(events[i]);\n",
        "    }\n",
        "\n",
        "\n",
        "    Element.prototype.mousewheel = function (fn, scope) {\n",
        "        if (Snap.is(fn, \"function\")) {\n",
        "            var el = this;\n",
        "            var fn2 = function (event) {\n",
        "                fn.apply(el, [event]);\n",
        "            };\n",
        "        }\n",
        "\n",
        "        this.node.addEventListener(\n",
        "            /Firefox/i.test(navigator.userAgent) ? \"DOMMouseScroll\" : \"mousewheel\",\n",
        "            fn2);\n",
        "\n",
        "        return this;\n",
        "    };\n",
        "\n",
        "\n",
        "    // Snap's attr function can be too slow for things like panning/zooming.\n",
        "    // This is a function to directly update element attributes without going\n",
        "    // through eve.\n",
        "    Element.prototype.attribute = function(key, val) {\n",
        "        if (val === undefined) {\n",
        "            return this.node.getAttribute(key, val);\n",
        "        } else {\n",
        "            return this.node.setAttribute(key, val);\n",
        "        }\n",
        "    };\n",
        "});\n",
        "\n",
        "\n",
        "// When the plot is moused over, emphasize the grid lines.\n",
        "Gadfly.plot_mouseover = function(event) {\n",
        "    var root = this.plotroot();\n",
        "    init_pan_zoom(root);\n",
        "\n",
        "    var xgridlines = root.select(\".xgridlines\"),\n",
        "        ygridlines = root.select(\".ygridlines\");\n",
        "\n",
        "    xgridlines.data(\"unfocused_strokedash\",\n",
        "                    xgridlines.attr(\"stroke-dasharray\").replace(/px/g, \"mm\"))\n",
        "    ygridlines.data(\"unfocused_strokedash\",\n",
        "                    ygridlines.attr(\"stroke-dasharray\").replace(/px/g, \"mm\"))\n",
        "\n",
        "    // emphasize grid lines\n",
        "    var destcolor = root.data(\"focused_xgrid_color\");\n",
        "    xgridlines.attr(\"stroke-dasharray\", \"none\")\n",
        "              .selectAll(\"path\")\n",
        "              .animate({stroke: destcolor}, 250);\n",
        "\n",
        "    destcolor = root.data(\"focused_ygrid_color\");\n",
        "    ygridlines.attr(\"stroke-dasharray\", \"none\")\n",
        "              .selectAll(\"path\")\n",
        "              .animate({stroke: destcolor}, 250);\n",
        "\n",
        "    // reveal zoom slider\n",
        "    root.select(\".zoomslider\")\n",
        "        .animate({opacity: 1.0}, 250);\n",
        "};\n",
        "\n",
        "\n",
        "// Unemphasize grid lines on mouse out.\n",
        "Gadfly.plot_mouseout = function(event) {\n",
        "    var root = this.plotroot();\n",
        "    var xgridlines = root.select(\".xgridlines\"),\n",
        "        ygridlines = root.select(\".ygridlines\");\n",
        "\n",
        "    var destcolor = root.data(\"unfocused_xgrid_color\");\n",
        "\n",
        "    xgridlines.attr(\"stroke-dasharray\", xgridlines.data(\"unfocused_strokedash\"))\n",
        "              .selectAll(\"path\")\n",
        "              .animate({stroke: destcolor}, 250);\n",
        "\n",
        "    destcolor = root.data(\"unfocused_ygrid_color\");\n",
        "    ygridlines.attr(\"stroke-dasharray\", ygridlines.data(\"unfocused_strokedash\"))\n",
        "              .selectAll(\"path\")\n",
        "              .animate({stroke: destcolor}, 250);\n",
        "\n",
        "    // hide zoom slider\n",
        "    root.select(\".zoomslider\")\n",
        "        .animate({opacity: 0.0}, 250);\n",
        "};\n",
        "\n",
        "\n",
        "var set_geometry_transform = function(root, tx, ty, scale) {\n",
        "    var xscalable = root.hasClass(\"xscalable\"),\n",
        "        yscalable = root.hasClass(\"yscalable\");\n",
        "\n",
        "    var old_scale = root.data(\"scale\");\n",
        "\n",
        "    var xscale = xscalable ? scale : 1.0,\n",
        "        yscale = yscalable ? scale : 1.0;\n",
        "\n",
        "    tx = xscalable ? tx : 0.0;\n",
        "    ty = yscalable ? ty : 0.0;\n",
        "\n",
        "    var t = new Snap.Matrix().translate(tx, ty).scale(xscale, yscale);\n",
        "\n",
        "    root.selectAll(\".geometry, image\")\n",
        "        .forEach(function (element, i) {\n",
        "            element.transform(t);\n",
        "        });\n",
        "\n",
        "    bounds = root.plotbounds();\n",
        "\n",
        "    if (yscalable) {\n",
        "        var xfixed_t = new Snap.Matrix().translate(0, ty).scale(1.0, yscale);\n",
        "        root.selectAll(\".xfixed\")\n",
        "            .forEach(function (element, i) {\n",
        "                element.transform(xfixed_t);\n",
        "            });\n",
        "\n",
        "        root.select(\".ylabels\")\n",
        "            .transform(xfixed_t)\n",
        "            .selectAll(\"text\")\n",
        "            .forEach(function (element, i) {\n",
        "                if (element.attribute(\"gadfly:inscale\") == \"true\") {\n",
        "                    var cx = element.asPX(\"x\"),\n",
        "                        cy = element.asPX(\"y\");\n",
        "                    var st = element.data(\"static_transform\");\n",
        "                    unscale_t = new Snap.Matrix();\n",
        "                    unscale_t.scale(1, 1/scale, cx, cy).add(st);\n",
        "                    element.transform(unscale_t);\n",
        "\n",
        "                    var y = cy * scale + ty;\n",
        "                    element.attr(\"visibility\",\n",
        "                        bounds.y0 <= y && y <= bounds.y1 ? \"visible\" : \"hidden\");\n",
        "                }\n",
        "            });\n",
        "    }\n",
        "\n",
        "    if (xscalable) {\n",
        "        var yfixed_t = new Snap.Matrix().translate(tx, 0).scale(xscale, 1.0);\n",
        "        var xtrans = new Snap.Matrix().translate(tx, 0);\n",
        "        root.selectAll(\".yfixed\")\n",
        "            .forEach(function (element, i) {\n",
        "                element.transform(yfixed_t);\n",
        "            });\n",
        "\n",
        "        root.select(\".xlabels\")\n",
        "            .transform(yfixed_t)\n",
        "            .selectAll(\"text\")\n",
        "            .forEach(function (element, i) {\n",
        "                if (element.attribute(\"gadfly:inscale\") == \"true\") {\n",
        "                    var cx = element.asPX(\"x\"),\n",
        "                        cy = element.asPX(\"y\");\n",
        "                    var st = element.data(\"static_transform\");\n",
        "                    unscale_t = new Snap.Matrix();\n",
        "                    unscale_t.scale(1/scale, 1, cx, cy).add(st);\n",
        "\n",
        "                    element.transform(unscale_t);\n",
        "\n",
        "                    var x = cx * scale + tx;\n",
        "                    element.attr(\"visibility\",\n",
        "                        bounds.x0 <= x && x <= bounds.x1 ? \"visible\" : \"hidden\");\n",
        "                    }\n",
        "            });\n",
        "    }\n",
        "\n",
        "    // we must unscale anything that is scale invariance: widths, raiduses, etc.\n",
        "    var size_attribs = [\"font-size\"];\n",
        "    var unscaled_selection = \".geometry, .geometry *\";\n",
        "    if (xscalable) {\n",
        "        size_attribs.push(\"rx\");\n",
        "        unscaled_selection += \", .xgridlines\";\n",
        "    }\n",
        "    if (yscalable) {\n",
        "        size_attribs.push(\"ry\");\n",
        "        unscaled_selection += \", .ygridlines\";\n",
        "    }\n",
        "\n",
        "    root.selectAll(unscaled_selection)\n",
        "        .forEach(function (element, i) {\n",
        "            // circle need special help\n",
        "            if (element.node.nodeName == \"circle\") {\n",
        "                var cx = element.attribute(\"cx\"),\n",
        "                    cy = element.attribute(\"cy\");\n",
        "                unscale_t = new Snap.Matrix().scale(1/xscale, 1/yscale,\n",
        "                                                        cx, cy);\n",
        "                element.transform(unscale_t);\n",
        "                return;\n",
        "            }\n",
        "\n",
        "            for (i in size_attribs) {\n",
        "                var key = size_attribs[i];\n",
        "                var val = parseFloat(element.attribute(key));\n",
        "                if (val !== undefined && val != 0 && !isNaN(val)) {\n",
        "                    element.attribute(key, val * old_scale / scale);\n",
        "                }\n",
        "            }\n",
        "        });\n",
        "};\n",
        "\n",
        "\n",
        "// Find the most appropriate tick scale and update label visibility.\n",
        "var update_tickscale = function(root, scale, axis) {\n",
        "    if (!root.hasClass(axis + \"scalable\")) return;\n",
        "\n",
        "    var tickscales = root.data(axis + \"tickscales\");\n",
        "    var best_tickscale = 1.0;\n",
        "    var best_tickscale_dist = Infinity;\n",
        "    for (tickscale in tickscales) {\n",
        "        var dist = Math.abs(Math.log(tickscale) - Math.log(scale));\n",
        "        if (dist < best_tickscale_dist) {\n",
        "            best_tickscale_dist = dist;\n",
        "            best_tickscale = tickscale;\n",
        "        }\n",
        "    }\n",
        "\n",
        "    if (best_tickscale != root.data(axis + \"tickscale\")) {\n",
        "        root.data(axis + \"tickscale\", best_tickscale);\n",
        "        var mark_inscale_gridlines = function (element, i) {\n",
        "            var inscale = element.attr(\"gadfly:scale\") == best_tickscale;\n",
        "            element.attribute(\"gadfly:inscale\", inscale);\n",
        "            element.attr(\"visibility\", inscale ? \"visible\" : \"hidden\");\n",
        "        };\n",
        "\n",
        "        var mark_inscale_labels = function (element, i) {\n",
        "            var inscale = element.attr(\"gadfly:scale\") == best_tickscale;\n",
        "            element.attribute(\"gadfly:inscale\", inscale);\n",
        "            element.attr(\"visibility\", inscale ? \"visible\" : \"hidden\");\n",
        "        };\n",
        "\n",
        "        root.select(\".\" + axis + \"gridlines\").selectAll(\"path\").forEach(mark_inscale_gridlines);\n",
        "        root.select(\".\" + axis + \"labels\").selectAll(\"text\").forEach(mark_inscale_labels);\n",
        "    }\n",
        "};\n",
        "\n",
        "\n",
        "var set_plot_pan_zoom = function(root, tx, ty, scale) {\n",
        "    var old_scale = root.data(\"scale\");\n",
        "    var bounds = root.plotbounds();\n",
        "\n",
        "    var width = bounds.x1 - bounds.x0,\n",
        "        height = bounds.y1 - bounds.y0;\n",
        "\n",
        "    // compute the viewport derived from tx, ty, and scale\n",
        "    var x_min = -width * scale - (scale * width - width),\n",
        "        x_max = width * scale,\n",
        "        y_min = -height * scale - (scale * height - height),\n",
        "        y_max = height * scale;\n",
        "\n",
        "    var x0 = bounds.x0 - scale * bounds.x0,\n",
        "        y0 = bounds.y0 - scale * bounds.y0;\n",
        "\n",
        "    var tx = Math.max(Math.min(tx - x0, x_max), x_min),\n",
        "        ty = Math.max(Math.min(ty - y0, y_max), y_min);\n",
        "\n",
        "    tx += x0;\n",
        "    ty += y0;\n",
        "\n",
        "    // when the scale change, we may need to alter which set of\n",
        "    // ticks is being displayed\n",
        "    if (scale != old_scale) {\n",
        "        update_tickscale(root, scale, \"x\");\n",
        "        update_tickscale(root, scale, \"y\");\n",
        "    }\n",
        "\n",
        "    set_geometry_transform(root, tx, ty, scale);\n",
        "\n",
        "    root.data(\"scale\", scale);\n",
        "    root.data(\"tx\", tx);\n",
        "    root.data(\"ty\", ty);\n",
        "};\n",
        "\n",
        "\n",
        "var scale_centered_translation = function(root, scale) {\n",
        "    var bounds = root.plotbounds();\n",
        "\n",
        "    var width = bounds.x1 - bounds.x0,\n",
        "        height = bounds.y1 - bounds.y0;\n",
        "\n",
        "    var tx0 = root.data(\"tx\"),\n",
        "        ty0 = root.data(\"ty\");\n",
        "\n",
        "    var scale0 = root.data(\"scale\");\n",
        "\n",
        "    // how off from center the current view is\n",
        "    var xoff = tx0 - (bounds.x0 * (1 - scale0) + (width * (1 - scale0)) / 2),\n",
        "        yoff = ty0 - (bounds.y0 * (1 - scale0) + (height * (1 - scale0)) / 2);\n",
        "\n",
        "    // rescale offsets\n",
        "    xoff = xoff * scale / scale0;\n",
        "    yoff = yoff * scale / scale0;\n",
        "\n",
        "    // adjust for the panel position being scaled\n",
        "    var x_edge_adjust = bounds.x0 * (1 - scale),\n",
        "        y_edge_adjust = bounds.y0 * (1 - scale);\n",
        "\n",
        "    return {\n",
        "        x: xoff + x_edge_adjust + (width - width * scale) / 2,\n",
        "        y: yoff + y_edge_adjust + (height - height * scale) / 2\n",
        "    };\n",
        "};\n",
        "\n",
        "\n",
        "// Initialize data for panning zooming if it isn't already.\n",
        "var init_pan_zoom = function(root) {\n",
        "    if (root.data(\"zoompan-ready\")) {\n",
        "        return;\n",
        "    }\n",
        "\n",
        "    // The non-scaling-stroke trick. Rather than try to correct for the\n",
        "    // stroke-width when zooming, we force it to a fixed value.\n",
        "    var px_per_mm = root.node.getCTM().a;\n",
        "\n",
        "    // Drag events report deltas in pixels, which we'd like to convert to\n",
        "    // millimeters.\n",
        "    root.data(\"px_per_mm\", px_per_mm);\n",
        "\n",
        "    root.selectAll(\"path\")\n",
        "        .forEach(function (element, i) {\n",
        "        sw = element.asPX(\"stroke-width\") * px_per_mm;\n",
        "        if (sw > 0) {\n",
        "            element.attribute(\"stroke-width\", sw);\n",
        "            element.attribute(\"vector-effect\", \"non-scaling-stroke\");\n",
        "        }\n",
        "    });\n",
        "\n",
        "    // Store ticks labels original tranformation\n",
        "    root.selectAll(\".xlabels > text, .ylabels > text\")\n",
        "        .forEach(function (element, i) {\n",
        "            var lm = element.transform().localMatrix;\n",
        "            element.data(\"static_transform\",\n",
        "                new Snap.Matrix(lm.a, lm.b, lm.c, lm.d, lm.e, lm.f));\n",
        "        });\n",
        "\n",
        "    if (root.data(\"tx\") === undefined) root.data(\"tx\", 0);\n",
        "    if (root.data(\"ty\") === undefined) root.data(\"ty\", 0);\n",
        "    if (root.data(\"scale\") === undefined) root.data(\"scale\", 1.0);\n",
        "    if (root.data(\"xtickscales\") === undefined) {\n",
        "\n",
        "        // index all the tick scales that are listed\n",
        "        var xtickscales = {};\n",
        "        var ytickscales = {};\n",
        "        var add_x_tick_scales = function (element, i) {\n",
        "            xtickscales[element.attribute(\"gadfly:scale\")] = true;\n",
        "        };\n",
        "        var add_y_tick_scales = function (element, i) {\n",
        "            ytickscales[element.attribute(\"gadfly:scale\")] = true;\n",
        "        };\n",
        "\n",
        "        root.select(\".xgridlines\").selectAll(\"path\").forEach(add_x_tick_scales);\n",
        "        root.select(\".ygridlines\").selectAll(\"path\").forEach(add_y_tick_scales);\n",
        "        root.select(\".xlabels\").selectAll(\"text\").forEach(add_x_tick_scales);\n",
        "        root.select(\".ylabels\").selectAll(\"text\").forEach(add_y_tick_scales);\n",
        "\n",
        "        root.data(\"xtickscales\", xtickscales);\n",
        "        root.data(\"ytickscales\", ytickscales);\n",
        "        root.data(\"xtickscale\", 1.0);\n",
        "    }\n",
        "\n",
        "    var min_scale = 1.0, max_scale = 1.0;\n",
        "    for (scale in xtickscales) {\n",
        "        min_scale = Math.min(min_scale, scale);\n",
        "        max_scale = Math.max(max_scale, scale);\n",
        "    }\n",
        "    for (scale in ytickscales) {\n",
        "        min_scale = Math.min(min_scale, scale);\n",
        "        max_scale = Math.max(max_scale, scale);\n",
        "    }\n",
        "    root.data(\"min_scale\", min_scale);\n",
        "    root.data(\"max_scale\", max_scale);\n",
        "\n",
        "    // store the original positions of labels\n",
        "    root.select(\".xlabels\")\n",
        "        .selectAll(\"text\")\n",
        "        .forEach(function (element, i) {\n",
        "            element.data(\"x\", element.asPX(\"x\"));\n",
        "        });\n",
        "\n",
        "    root.select(\".ylabels\")\n",
        "        .selectAll(\"text\")\n",
        "        .forEach(function (element, i) {\n",
        "            element.data(\"y\", element.asPX(\"y\"));\n",
        "        });\n",
        "\n",
        "    // mark grid lines and ticks as in or out of scale.\n",
        "    var mark_inscale = function (element, i) {\n",
        "        element.attribute(\"gadfly:inscale\", element.attribute(\"gadfly:scale\") == 1.0);\n",
        "    };\n",
        "\n",
        "    root.select(\".xgridlines\").selectAll(\"path\").forEach(mark_inscale);\n",
        "    root.select(\".ygridlines\").selectAll(\"path\").forEach(mark_inscale);\n",
        "    root.select(\".xlabels\").selectAll(\"text\").forEach(mark_inscale);\n",
        "    root.select(\".ylabels\").selectAll(\"text\").forEach(mark_inscale);\n",
        "\n",
        "    // figure out the upper ond lower bounds on panning using the maximum\n",
        "    // and minum grid lines\n",
        "    var bounds = root.plotbounds();\n",
        "    var pan_bounds = {\n",
        "        x0: 0.0,\n",
        "        y0: 0.0,\n",
        "        x1: 0.0,\n",
        "        y1: 0.0\n",
        "    };\n",
        "\n",
        "    root.select(\".xgridlines\")\n",
        "        .selectAll(\"path\")\n",
        "        .forEach(function (element, i) {\n",
        "            if (element.attribute(\"gadfly:inscale\") == \"true\") {\n",
        "                var bbox = element.node.getBBox();\n",
        "                if (bounds.x1 - bbox.x < pan_bounds.x0) {\n",
        "                    pan_bounds.x0 = bounds.x1 - bbox.x;\n",
        "                }\n",
        "                if (bounds.x0 - bbox.x > pan_bounds.x1) {\n",
        "                    pan_bounds.x1 = bounds.x0 - bbox.x;\n",
        "                }\n",
        "            }\n",
        "        });\n",
        "\n",
        "    root.select(\".ygridlines\")\n",
        "        .selectAll(\"path\")\n",
        "        .forEach(function (element, i) {\n",
        "            if (element.attribute(\"gadfly:inscale\") == \"true\") {\n",
        "                var bbox = element.node.getBBox();\n",
        "                if (bounds.y1 - bbox.y < pan_bounds.y0) {\n",
        "                    pan_bounds.y0 = bounds.y1 - bbox.y;\n",
        "                }\n",
        "                if (bounds.y0 - bbox.y > pan_bounds.y1) {\n",
        "                    pan_bounds.y1 = bounds.y0 - bbox.y;\n",
        "                }\n",
        "            }\n",
        "        });\n",
        "\n",
        "    // nudge these values a little\n",
        "    pan_bounds.x0 -= 5;\n",
        "    pan_bounds.x1 += 5;\n",
        "    pan_bounds.y0 -= 5;\n",
        "    pan_bounds.y1 += 5;\n",
        "    root.data(\"pan_bounds\", pan_bounds);\n",
        "\n",
        "    // Set all grid lines at scale 1.0 to visible. Out of bounds lines\n",
        "    // will be clipped.\n",
        "    root.select(\".xgridlines\")\n",
        "        .selectAll(\"path\")\n",
        "        .forEach(function (element, i) {\n",
        "            if (element.attribute(\"gadfly:inscale\") == \"true\") {\n",
        "                element.attr(\"visibility\", \"visible\");\n",
        "            }\n",
        "        });\n",
        "\n",
        "    root.select(\".ygridlines\")\n",
        "        .selectAll(\"path\")\n",
        "        .forEach(function (element, i) {\n",
        "            if (element.attribute(\"gadfly:inscale\") == \"true\") {\n",
        "                element.attr(\"visibility\", \"visible\");\n",
        "            }\n",
        "        });\n",
        "\n",
        "    root.data(\"zoompan-ready\", true)\n",
        "};\n",
        "\n",
        "\n",
        "// Panning\n",
        "Gadfly.guide_background_drag_onmove = function(dx, dy, x, y, event) {\n",
        "    var root = this.plotroot();\n",
        "    var px_per_mm = root.data(\"px_per_mm\");\n",
        "    dx /= px_per_mm;\n",
        "    dy /= px_per_mm;\n",
        "\n",
        "    var tx0 = root.data(\"tx\"),\n",
        "        ty0 = root.data(\"ty\");\n",
        "\n",
        "    var dx0 = root.data(\"dx\"),\n",
        "        dy0 = root.data(\"dy\");\n",
        "\n",
        "    root.data(\"dx\", dx);\n",
        "    root.data(\"dy\", dy);\n",
        "\n",
        "    dx = dx - dx0;\n",
        "    dy = dy - dy0;\n",
        "\n",
        "    var tx = tx0 + dx,\n",
        "        ty = ty0 + dy;\n",
        "\n",
        "    set_plot_pan_zoom(root, tx, ty, root.data(\"scale\"));\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.guide_background_drag_onstart = function(x, y, event) {\n",
        "    var root = this.plotroot();\n",
        "    root.data(\"dx\", 0);\n",
        "    root.data(\"dy\", 0);\n",
        "    init_pan_zoom(root);\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.guide_background_drag_onend = function(event) {\n",
        "    var root = this.plotroot();\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.guide_background_scroll = function(event) {\n",
        "    if (event.shiftKey) {\n",
        "        var root = this.plotroot();\n",
        "        init_pan_zoom(root);\n",
        "        var new_scale = root.data(\"scale\") * Math.pow(2, 0.002 * event.wheelDelta);\n",
        "        new_scale = Math.max(\n",
        "            root.data(\"min_scale\"),\n",
        "            Math.min(root.data(\"max_scale\"), new_scale))\n",
        "        update_plot_scale(root, new_scale);\n",
        "        event.stopPropagation();\n",
        "    }\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.zoomslider_button_mouseover = function(event) {\n",
        "    this.select(\".button_logo\")\n",
        "         .animate({fill: this.data(\"mouseover_color\")}, 100);\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.zoomslider_button_mouseout = function(event) {\n",
        "     this.select(\".button_logo\")\n",
        "         .animate({fill: this.data(\"mouseout_color\")}, 100);\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.zoomslider_zoomout_click = function(event) {\n",
        "    var root = this.plotroot();\n",
        "    init_pan_zoom(root);\n",
        "    var min_scale = root.data(\"min_scale\"),\n",
        "        scale = root.data(\"scale\");\n",
        "    Snap.animate(\n",
        "        scale,\n",
        "        Math.max(min_scale, scale / 1.5),\n",
        "        function (new_scale) {\n",
        "            update_plot_scale(root, new_scale);\n",
        "        },\n",
        "        200);\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.zoomslider_zoomin_click = function(event) {\n",
        "    var root = this.plotroot();\n",
        "    init_pan_zoom(root);\n",
        "    var max_scale = root.data(\"max_scale\"),\n",
        "        scale = root.data(\"scale\");\n",
        "\n",
        "    Snap.animate(\n",
        "        scale,\n",
        "        Math.min(max_scale, scale * 1.5),\n",
        "        function (new_scale) {\n",
        "            update_plot_scale(root, new_scale);\n",
        "        },\n",
        "        200);\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.zoomslider_track_click = function(event) {\n",
        "    // TODO\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.zoomslider_thumb_mousedown = function(event) {\n",
        "    this.animate({fill: this.data(\"mouseover_color\")}, 100);\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.zoomslider_thumb_mouseup = function(event) {\n",
        "    this.animate({fill: this.data(\"mouseout_color\")}, 100);\n",
        "};\n",
        "\n",
        "\n",
        "// compute the position in [0, 1] of the zoom slider thumb from the current scale\n",
        "var slider_position_from_scale = function(scale, min_scale, max_scale) {\n",
        "    if (scale >= 1.0) {\n",
        "        return 0.5 + 0.5 * (Math.log(scale) / Math.log(max_scale));\n",
        "    }\n",
        "    else {\n",
        "        return 0.5 * (Math.log(scale) - Math.log(min_scale)) / (0 - Math.log(min_scale));\n",
        "    }\n",
        "}\n",
        "\n",
        "\n",
        "var update_plot_scale = function(root, new_scale) {\n",
        "    var trans = scale_centered_translation(root, new_scale);\n",
        "    set_plot_pan_zoom(root, trans.x, trans.y, new_scale);\n",
        "\n",
        "    root.selectAll(\".zoomslider_thumb\")\n",
        "        .forEach(function (element, i) {\n",
        "            var min_pos = element.data(\"min_pos\"),\n",
        "                max_pos = element.data(\"max_pos\"),\n",
        "                min_scale = root.data(\"min_scale\"),\n",
        "                max_scale = root.data(\"max_scale\");\n",
        "            var xmid = (min_pos + max_pos) / 2;\n",
        "            var xpos = slider_position_from_scale(new_scale, min_scale, max_scale);\n",
        "            element.transform(new Snap.Matrix().translate(\n",
        "                Math.max(min_pos, Math.min(\n",
        "                         max_pos, min_pos + (max_pos - min_pos) * xpos)) - xmid, 0));\n",
        "    });\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.zoomslider_thumb_dragmove = function(dx, dy, x, y) {\n",
        "    var root = this.plotroot();\n",
        "    var min_pos = this.data(\"min_pos\"),\n",
        "        max_pos = this.data(\"max_pos\"),\n",
        "        min_scale = root.data(\"min_scale\"),\n",
        "        max_scale = root.data(\"max_scale\"),\n",
        "        old_scale = root.data(\"old_scale\");\n",
        "\n",
        "    var px_per_mm = root.data(\"px_per_mm\");\n",
        "    dx /= px_per_mm;\n",
        "    dy /= px_per_mm;\n",
        "\n",
        "    var xmid = (min_pos + max_pos) / 2;\n",
        "    var xpos = slider_position_from_scale(old_scale, min_scale, max_scale) +\n",
        "                   dx / (max_pos - min_pos);\n",
        "\n",
        "    // compute the new scale\n",
        "    var new_scale;\n",
        "    if (xpos >= 0.5) {\n",
        "        new_scale = Math.exp(2.0 * (xpos - 0.5) * Math.log(max_scale));\n",
        "    }\n",
        "    else {\n",
        "        new_scale = Math.exp(2.0 * xpos * (0 - Math.log(min_scale)) +\n",
        "                        Math.log(min_scale));\n",
        "    }\n",
        "    new_scale = Math.min(max_scale, Math.max(min_scale, new_scale));\n",
        "\n",
        "    update_plot_scale(root, new_scale);\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.zoomslider_thumb_dragstart = function(event) {\n",
        "    var root = this.plotroot();\n",
        "    init_pan_zoom(root);\n",
        "\n",
        "    // keep track of what the scale was when we started dragging\n",
        "    root.data(\"old_scale\", root.data(\"scale\"));\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.zoomslider_thumb_dragend = function(event) {\n",
        "};\n",
        "\n",
        "\n",
        "var toggle_color_class = function(root, color_class, ison) {\n",
        "    var guides = root.selectAll(\".guide.\" + color_class + \",.guide .\" + color_class);\n",
        "    var geoms = root.selectAll(\".geometry.\" + color_class + \",.geometry .\" + color_class);\n",
        "    if (ison) {\n",
        "        guides.animate({opacity: 0.5}, 250);\n",
        "        geoms.animate({opacity: 0.0}, 250);\n",
        "    } else {\n",
        "        guides.animate({opacity: 1.0}, 250);\n",
        "        geoms.animate({opacity: 1.0}, 250);\n",
        "    }\n",
        "};\n",
        "\n",
        "\n",
        "Gadfly.colorkey_swatch_click = function(event) {\n",
        "    var root = this.plotroot();\n",
        "    var color_class = this.data(\"color_class\");\n",
        "\n",
        "    if (event.shiftKey) {\n",
        "        root.selectAll(\".colorkey text\")\n",
        "            .forEach(function (element) {\n",
        "                var other_color_class = element.data(\"color_class\");\n",
        "                if (other_color_class != color_class) {\n",
        "                    toggle_color_class(root, other_color_class,\n",
        "                                       element.attr(\"opacity\") == 1.0);\n",
        "                }\n",
        "            });\n",
        "    } else {\n",
        "        toggle_color_class(root, color_class, this.attr(\"opacity\") == 1.0);\n",
        "    }\n",
        "};\n",
        "\n",
        "\n",
        "return Gadfly;\n",
        "\n",
        "}));\n",
        "\n",
        "\n",
        "//@ sourceURL=gadfly.js\n",
        "\n",
        "(function (glob, factory) {\n",
        "    // AMD support\n",
        "      if (typeof require === \"function\" && typeof define === \"function\" && define.amd) {\n",
        "        require([\"Snap.svg\", \"Gadfly\"], function (Snap, Gadfly) {\n",
        "            factory(Snap, Gadfly);\n",
        "        });\n",
        "      } else {\n",
        "          factory(glob.Snap, glob.Gadfly);\n",
        "      }\n",
        "})(window, function (Snap, Gadfly) {\n",
        "    var fig = Snap(\"#fig-1bfd9875cd304c4a906fe3eb606604b7\");\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-5\")\n",
        "   .mouseenter(Gadfly.plot_mouseover)\n",
        ".mouseleave(Gadfly.plot_mouseout)\n",
        ".mousewheel(Gadfly.guide_background_scroll)\n",
        ".drag(Gadfly.guide_background_drag_onmove,\n",
        "      Gadfly.guide_background_drag_onstart,\n",
        "      Gadfly.guide_background_drag_onend)\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-8\")\n",
        "   .plotroot().data(\"unfocused_ygrid_color\", \"#D0D0E0\")\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-8\")\n",
        "   .plotroot().data(\"focused_ygrid_color\", \"#A0A0A0\")\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-9\")\n",
        "   .plotroot().data(\"unfocused_xgrid_color\", \"#D0D0E0\")\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-9\")\n",
        "   .plotroot().data(\"focused_xgrid_color\", \"#A0A0A0\")\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-15\")\n",
        "   .data(\"mouseover_color\", \"#cd5c5c\")\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-15\")\n",
        "   .data(\"mouseout_color\", \"#6a6a6a\")\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-15\")\n",
        "   .click(Gadfly.zoomslider_zoomin_click)\n",
        ".mouseenter(Gadfly.zoomslider_button_mouseover)\n",
        ".mouseleave(Gadfly.zoomslider_button_mouseout)\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-17\")\n",
        "   .data(\"max_pos\", 229)\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-17\")\n",
        "   .data(\"min_pos\", 212)\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-17\")\n",
        "   .click(Gadfly.zoomslider_track_click);\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-18\")\n",
        "   .data(\"max_pos\", 229)\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-18\")\n",
        "   .data(\"min_pos\", 212)\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-18\")\n",
        "   .data(\"mouseover_color\", \"#cd5c5c\")\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-18\")\n",
        "   .data(\"mouseout_color\", \"#6a6a6a\")\n",
        ";\n",
        "fig.select(\"#fig-1bfd9875cd304c4a906fe3eb606604b7-element-18\")\n",
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