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allow the user to disable amalgamation #673

Merged
merged 13 commits into from Aug 9, 2023
Merged

allow the user to disable amalgamation #673

merged 13 commits into from Aug 9, 2023

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palday
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@palday palday commented Apr 5, 2023

closes #638

Did behavior change? Did you add need features? If so, please update NEWS.md

  • add entry in NEWS.md
  • after opening this PR, add a reference and run docs/NEWS-update.jl to update the cross-references.

Should we release your changes right away? If so, bump the version:

  • I've bumped the version appropriately

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codecov bot commented Apr 5, 2023

Codecov Report

Patch coverage: 100.00% and project coverage change: +0.08% 🎉

Comparison is base (5ade8c4) 95.72% compared to head (eb8f9e0) 95.81%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #673      +/-   ##
==========================================
+ Coverage   95.72%   95.81%   +0.08%     
==========================================
  Files          35       35              
  Lines        3226     3247      +21     
==========================================
+ Hits         3088     3111      +23     
+ Misses        138      136       -2     
Flag Coverage Δ
current 95.81% <100.00%> (+0.08%) ⬆️
minimum 95.70% <100.00%> (+0.09%) ⬆️
nightly 95.81% <100.00%> (+0.08%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files Changed Coverage Δ
src/generalizedlinearmixedmodel.jl 90.24% <100.00%> (ø)
src/linalg/rankUpdate.jl 98.30% <100.00%> (+0.10%) ⬆️
src/linearmixedmodel.jl 94.97% <100.00%> (+0.09%) ⬆️
src/mixedmodel.jl 91.52% <100.00%> (+0.29%) ⬆️
src/remat.jl 97.17% <100.00%> (+0.47%) ⬆️

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@liamlundy
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@palday thanks for putting this PR together. It appears to solve the issues we have been having with model fitting. Do you have a sense of when this will be merged and released? I would be happy to contribute to any testing or documentation that is still needed prior to merge. Thanks again!

@palday palday marked this pull request as ready for review August 8, 2023 20:02
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palday and others added 2 commits August 8, 2023 15:11
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
@palday palday merged commit 2af0322 into main Aug 9, 2023
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@palday palday deleted the pa/mercury branch August 9, 2023 13:31
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palday commented Aug 9, 2023

@liamlundy this should now be available in the latest release

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Rescaling causes huge differences in fixed effect coefficients
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