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index.Rmd
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index.Rmd
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---
title: "Home"
site: workflowr::wflow_site
output:
workflowr::wflow_html:
toc: false
editor_options:
chunk_output_type: console
---
Welcome to my research website.
This site contains analyses performed on human Embryoid bodies, spheroids of spontaneously differentiating cells generated from induced pluripotent stem cells.
Single Cell RNA-seq data was collected using the 10x platform.
Preprocessing, QC, and filtering
1. Run EmptyDrops, Add Metadata to Seurat object from each 10x lane
2. Filter and run SCTransform on each 10x lane
-[Batch1Lane1](SampleFilteringandSCT_Batch1Lane1.html)
-[Batch1Lane3](SampleFilteringandSCT_Batch1Lane3.html)
-[Batch1Lane4](SampleFilteringandSCT_Batch1Lane4.html)
-[Batch1Lane5](SampleFilteringandSCT_Batch1Lane5.html)
-[Batch1Lane6](SampleFilteringandSCT_Batch1Lane6.html)
-[Batch1Lane7](SampleFilteringandSCT_Batch1Lane7.html)
-[Batch1Lane8](SampleFilteringandSCT_Batch1Lane8.html)
-[Batch1Lane9](SampleFilteringandSCT_Batch1Lane9.html)
-[Batch2Lane1](SampleFilteringandSCT_Batch2Lane1.html)
-[Batch2Lane2](SampleFilteringandSCT_Batch2Lane2.html)
-[Batch2Lane3](SampleFilteringandSCT_Batch2Lane3.html)
-[Batch2Lane4](SampleFilteringandSCT_Batch2Lane4.html)
-[Batch3Lane1](SampleFilteringandSCT_Batch3Lane1.html)
-[Batch3Lane2](SampleFilteringandSCT_Batch3Lane2.html)
-[Batch3Lane3](SampleFilteringandSCT_Batch3Lane3.html)
-[Batch3Lane4](SampleFilteringandSCT_Batch3Lane4.html)