adding css and jobad services

sites/all/modules/sally/jobad/fex_tooltip.js

@@ -0,0 +1,16 @@
+(function($){JOBAD.modules.register({
+    info: {
+        'identifier': 'fex_tooltip',
+        'title': 'Testing tooltip',
+        'author': 'Alexandru Toader',
+        'description': 'Show text of fields that overflow ',
+        'hasCleanNamespace': false
+    },
+    hoverText: function(target){
+        if((target.is("span.title-dependency") || target.is("span.title-text") || target.is("div.cell-iterator") || target.is("div.cell-value"))
+            && target[0].scrollWidth> target.width()){
+           return target.text();
+       }
+        },
+});
+})(JOBAD.refs.$);

sites/all/modules/sally/jobad/navigate.js

@@ -0,0 +1,49 @@
+(function($){
+    JOBAD.modules.register({
+        info: {
+            'identifier': 'navigate',
+            'title': 'Show dependency graph',
+            'author': 'Alexandru Toader',
+            'description': 'Show the dependency graph of the selected item',
+            'hasCleanNamespace': false
+        },
+        /**
+    @base_path base path for the planetary installation
+    @token string used to identify the workflow
+    @context Context message containing all the available cd/name pairs in the current document
+    */
+        init: function (JOBADInstance, base_path, token, context) {
+            this.localStore.set("base_path", base_path);
+            this.localStore.set("token", token);
+            this.localStore.set("context", context);
+        },
+        contextMenuEntries: function (target) {
+            var message = this.localStore.get("context");
+            var base_path = this.localStore.get("base_path");
+            var token = this.localStore.get("token");
+            var i = 0;
+            while (true) {
+                if (typeof message.context[i] == 'undefined')
+                    break;
+                if (target.is('span') && target.is('.omdoc-term') && target.attr('omdoc:cd') == message.context[i].theory && target.attr('omdoc:name') == message.context[i].symbol)
+                    return [
+                    ["Show cell in spreadsheet",
+                        function () {
+                            if (Communication.isActive()) {
+                                var token = this.localStore.get("token");
+                                var term = new sally.OntologyItem;
+                                term.theory = target.attr("omdoc:cd");
+                                term.symbol = target.attr("omdoc:name");
+                                var message = new sally.TheoNavigateTo;
+                                message.term = term;
+                                message.actionId = token;
+                                Communication.sendMessage(message);
+                            }
+                        }
+                    ]];
+                i++;
+            }
+
+        },
+    });
+})(JOBAD.refs.$);

sites/all/modules/sally/jobad/opendef.js

@@ -0,0 +1,40 @@
+(function($){
+    JOBAD.modules.register({
+    info: {
+        'identifier': 'opendef',
+        'title': 'Open definition',
+        'author': 'Alexandru Toader',
+        'description': 'Open the definition of the selected ontology item',
+        'hasCleanNamespace': false
+    },
+    /**
+    @base_path base path for the planetary installation
+    @token string used to identify the workflow
+    */
+     init: function(JOBADInstance, base_path, token){
+     	this.localStore.set("base_path", base_path);
+     	this.localStore.set("token", token);	
+     },
+    contextMenuEntries: function (target) {
+        var cd, symbol;
+        var token = this.localStore.get("token");
+        var base_path = this.localStore.get("base_path");
+        if (target.is('span')) {
+            cd = target.attr("omdoc:cd");
+            symbol = target.attr("omdoc:name");
+        } else if (target.is('div')) {
+            var aux = target.attr('id');
+            aux = aux.substring(aux.lastIndexOf("/") + 1);
+            cd = aux.substring(0, aux.indexOf(".omdoc"));
+            symbol = aux.substring(aux.indexOf("#") + 1, aux.lastIndexOf(".def"));
+        }
+        if ((target.is('.omdoc-term') || target.attr('class') == 'node') && typeof(token) != 'undefined')
+            return { 
+                "Look-up definition": function(element) {
+                    window.open(base_path + "index.php?q=sally/showdef/" + cd + "/" + symbol + "/" + token, "_parent");
+                }
+            }
+
+    },
+});
+})(JOBAD.refs.$);

sites/all/modules/sally/jobad/searchGoogle.js

@@ -0,0 +1,45 @@
+(function($){JOBAD.modules.register({
+    info: {
+        'identifier': 'searchGoogle',
+        'title': 'Search Google',
+        'author': 'Alexandru Toader',
+        'description': 'Search Google for selected text or for the title of a node. ',
+        'hasCleanNamespace': false
+    },
+    getSelectedText: function () {
+        var selectedText = (window.getSelection ? window.getSelection() : document.getSelection ? document.getSelection() : document.selection.createRange().text
+            );
+        if (!selectedText || selectedText == "") {
+
+            if (document.activeElement && document.activeElement.selectionStart) {
+                selectedText = document.activeElement.value.substring(document.activeElement.selectionStart.document.activeElement.selectionEnd);
+            }
+        }
+
+        return selectedText;
+    },
+
+    contextMenuEntries: function (target) {
+        var txt = this.getSelectedText().toString();
+        var text = "Search Google for ";
+        if (txt && txt.replace(/\s+/g, ' ') != '') {
+            text += '"' + txt.substring(0, 5) + ".." + '""';
+            return [
+                [text, function (element) {
+                    window.open("http://www.google.com/search?q=" + txt, "_parent");
+                }]
+            ];
+        } else if (target.attr('class') == 'node' && target.is('div')) {
+            console.log("here");
+            txt = target.text();
+            text += '"' + txt.substring(0, 5) + ".." + '""';
+            return [
+                [text, function (element) {
+                    window.open("http://www.google.com/search?q=" + txt, "_parent");
+                }]
+            ];
+        }
+
+    },
+});
+})(JOBAD.refs.$);

sites/all/modules/sally/jobad/showGraph.js

@@ -0,0 +1,35 @@
+(function($){JOBAD.modules.register({
+    info: {
+        'identifier': 'showGraph',
+        'title': 'Show dependency graph',
+        'author': 'Alexandru Toader',
+        'description': 'Show the dependency graph of the selected item',
+        'hasCleanNamespace': false
+    },
+    /**
+    @base_path base path for the planetary installation
+    @token string used to identify the workflow
+    */
+    init: function(JOBADInstance, base_path, token){
+        this.localStore.set("base_path", base_path);
+        this.localStore.set("token", token);    
+     },
+    contextMenuEntries: function (target) {
+        var cd, symbol;
+        var token = this.localStore.get("token");
+        var base_path = this.localStore.get("base_path");
+        if (target.is('span')) {
+            cd = target.attr("omdoc:cd");
+            symbol = target.attr("omdoc:name");
+             if (target.is('.omdoc-term') && typeof(token) != 'undefined')
+            return [
+                ["Show dependency graph", function (element) {
+                    window.open(base_path+"index.php?q=sally/semnav/" + cd + "/" + symbol + "/" + token, "_parent");
+                }]
+            ];
+        }
+
+    },
+});
+})(JOBAD.refs.$);
+

sites/all/modules/sally/sally.css

@@ -0,0 +1,11 @@
+annotation-xml {
+	display:none;
+}
+
+span.omdoc-term {
+	color: blue;
+}
+
+mo {
+	display: none;
+}