NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(plot,mappoly.data)
S3method(plot,mappoly.group)
S3method(plot,mappoly.map)
S3method(plot,mappoly.rf.matrix)
S3method(plot,mappoly.sequence)
S3method(plot,mappoly.unique.seq)
S3method(plot,poly.est.two.pts.pairwise)
S3method(plot,two.pts.linkage.phases)
S3method(print,cache.info)
S3method(print,mappoly.data)
S3method(print,mappoly.genoprob)
S3method(print,mappoly.group)
S3method(print,mappoly.map)
S3method(print,mappoly.rf.matrix)
S3method(print,mappoly.sequence)
S3method(print,mappoly.unique.seq)
S3method(print,pcmap)
S3method(print,pcmap3d)
S3method(print,poly.est.two.pts.pairwise)
S3method(print,two.pts.linkage.phases)
export(add_mrk_at_tail_ph_list)
export(cache_counts_twopt)
export(calc_genoprob)
export(calc_genoprob_dist)
export(check_pairwise)
export(compare_haplotypes)
export(concatenate_new_marker)
export(concatenate_ph_list)
export(create_map)
export(dist_prob_to_class)
export(elim_conf_using_two_pts)
export(elim_equiv)
export(elim_redundant)
export(est_full_hmm_with_global_error)
export(est_pairwise_rf)
export(est_rf_hmm)
export(est_rf_hmm_sequential)
export(est_rf_hmm_single)
export(filter_map_at_hmm_thres)
export(filter_missing)
export(filter_non_conforming_classes)
export(filter_segregation)
export(genotyping_global_error)
export(get_LOD)
export(get_cache_two_pts_from_web)
export(get_counts_all_phases)
export(get_counts_one_parent)
export(get_full_info_tail)
export(get_genomic_order)
export(get_indices_from_selected_phases)
export(get_ph_list_subset)
export(get_rf_from_mat)
export(get_submap)
export(gg_color_hue)
export(group_mappoly)
export(imf_h)
export(imf_k)
export(imf_m)
export(ls_linkage_phases)
export(make_mat_mappoly)
export(make_pairs_mappoly)
export(make_seq_mappoly)
export(mds_mappoly)
export(mf_h)
export(mf_k)
export(mf_m)
export(mrk_chisq_test)
export(paralell_pairwise)
export(perm_pars)
export(perm_tot)
export(ph_list_to_matrix)
export(ph_matrix_to_list)
export(plot_compare_haplotypes)
export(plot_mrk_info)
export(poly_cross_simulate)
export(poly_hmm_est)
export(pos_twopt_est)
export(print_mrk)
export(read_geno)
export(read_geno_dist)
export(reest_map_geno_dist)
export(reest_rf)
export(rev_map)
export(rf_list_to_matrix)
export(rf_snp_filter)
export(segreg_poly)
export(select_rf)
export(sim_cross_two_informative_parents)
export(sim_homologous)
export(update_missing)
export(update_ph_list_at_hmm_thres)
import(RCurl)
import(Rcpp)
import(fields)
import(parallel)
importFrom(RColorBrewer,brewer.pal)
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,hcl)
importFrom(grDevices,pdf)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,pie)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(grid,gpar)
importFrom(grid,grid.lines)
importFrom(grid,grid.newpage)
importFrom(grid,grid.rect)
importFrom(grid,grid.roundrect)
importFrom(grid,grid.text)
importFrom(grid,pushViewport)
importFrom(grid,unit)
importFrom(grid,upViewport)
importFrom(grid,viewport)
importFrom(magrittr,"%>%")
importFrom(princurve,principal.curve)
importFrom(reshape,cast)
importFrom(reshape,melt)
importFrom(smacof,smacofSym)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,chisq.test)
importFrom(stats,cutree)
importFrom(stats,dhyper)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,na.omit)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,rect.hclust)
importFrom(stats,runif)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.csv)
useDynLib(mappoly)