Some types of ambiguous reads lacking further taxon codes

[bkohrn]

Reads with a t0 = -1 (indicating between species ties) lack any further information indicating which species the code refers to a tie between. Ideally, these should be indicated.

[bkohrn]

(e.g. in t1, t2, etc.)

[bkohrn]

Seems to be happening in PostBlastProcessing2 (in postBlastFilter.py); not sure why; as far as I can tell, it shouldn't be doing that. I'll do some debugging in the sample I noticed this in.

[bkohrn]

OK; figured out at least when it happens; this seems to happen when the two reads each have a singular best BLAST result, but don't agree on what that BLAST result is. Since the labeling of alternate species / blast results is based on a single-read basis, I need to come up with a way to recode this so both species are indicated in this event.