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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(FindPCAElbow)
export(GroupSmallClusters)
export(HTODemux2)
export(PurgeXenoGenes)
export(ScoreIgDiffs)
export(assignMetaData)
export(calcGEMClassification)
export(constructGEMs)
export(deMULTIplex)
export(getClosestFactors)
importFrom(Matrix,colSums)
importFrom(Seurat,AddModuleScore)
importFrom(Seurat,AverageExpression)
importFrom(Seurat,CellCycleScoring)
importFrom(Seurat,CreateAssayObject)
importFrom(Seurat,NormalizeData)
importFrom(Seurat,SCTransform)
importFrom(SeuratObject,AddMetaData)
importFrom(SeuratObject,CreateAssayObject)
importFrom(SeuratObject,CreateSeuratObject)
importFrom(SeuratObject,DefaultAssay)
importFrom(SeuratObject,GetAssayData)
importFrom(SeuratObject,Idents)
importFrom(SeuratObject,LogSeuratCommand)
importFrom(SeuratObject,SetAssayData)
importFrom(SeuratObject,WhichCells)
importFrom(cluster,clara)
importFrom(cowplot,plot_grid)
importFrom(data.table,data.table)
importFrom(data.table,foverlaps)
importFrom(data.table,setkey)
importFrom(deMULTIplex,classifyCells)
importFrom(deMULTIplex,findQ)
importFrom(deMULTIplex,findReclassCells)
importFrom(deMULTIplex,findThresh)
importFrom(deMULTIplex,rescueCells)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,filter)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,relocate)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(fitdistrplus,fitdist)
importFrom(future.apply,future_apply)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylim)
importFrom(grDevices,pdf)
importFrom(magrittr,"%>%")
importFrom(magrittr,extract)
importFrom(magrittr,extract2)
importFrom(magrittr,set_colnames)
importFrom(magrittr,use_series)
importFrom(purrr,map)
importFrom(purrr,map_dbl)
importFrom(purrr,reduce)
importFrom(rlang,"%||%")
importFrom(rlang,set_names)
importFrom(rsvd,rpca)
importFrom(sp,point.in.polygon)
importFrom(stats,kmeans)
importFrom(stats,quantile)
importFrom(stringr,str_detect)
importFrom(stringr,str_remove)
importFrom(stringr,str_remove_all)
importFrom(tibble,enframe)
importFrom(tidyr,replace_na)
importFrom(utils,combn)