A software for template matching on electron microscopy data.
📖 Official Documentation | 🚀 Installation Guide | 📚 API Reference
There are three ways to get pyTME up and running:
- Install from Source:
pip install git+https://github.com/KosinskiLab/pyTME- Install from PyPi:
pip install pytme- Docker Container: Build and use the pyTME container from Docker. This assumes a linux/amd64 platform.
docker build \
-t pytme \
--platform linux/amd64 \
-f docker/Dockerfile \
.🔗 For more on the Docker container, visit the Docker Hub page.
The pyTME publication is available on SoftwareX.
@article{Maurer:2024aa,
author = {Maurer, Valentin J. and Siggel, Marc and Kosinski, Jan},
journal = {SoftwareX},
pages = {101636},
title = {PyTME (Python Template Matching Engine): A fast, flexible, and multi-purpose template matching library for cryogenic electron microscopy data},
volume = {25},
year = {2024}}