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NEWS.md

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Changes in version 0.99.106 (2020-06-29)

  • Submitted to Bioconductor

Changes in version 1.0.0 (2020-10-27)

  • Accepted by Bioconductor. Included in RELEASE 3.12

Changes in version 1.0.1 (2020-01-26)

  • Fixed bug. Tests calling gprofiler now fixed to avoir error based on databases updates
  • Corrected undocumented params

Changes in version 1.1.5

  • Added a sub module detection function : get_sub_clusters()
  • Added a coloration argument on plot_module() to color graph according to given groups
  • Added warnings on suspicious power fitted and FAQ to help their resolution (get_fit.cor(), get_fit.expr(), build_net())
  • Added handling of NA in model matrix of associate_phenotype() and warnings when they are present
  • Added use of other correlation function in associate_phenotype()
  • Added a ggplot2 like palette generator (internal)
  • Removed hard coded arguments : o alpha for plot_expression_profiles() o text angle for plot_comparison_stats(), plot_modules_phenotype() o deepSplit for detect_modules()
  • Changed WGCNA::cor() + WGCNA::corPvalueStudent() functions for WGCNA::corAndPvalue()
  • Changed erroneous info on SVD/PCA in FAQ