Autometa: automated extraction of microbial genomes from individual shotgun metagenomes
An automated binning pipeline for single metagenomes, in particular host-associated and highly complex ones.
An automated binning pipeline for single metagenomes, in particular host-associated and highly complex ones.
If you find Autometa useful to your work, please cite our Autometa paper:
Miller, I. J.; Rees, E. R.; Ross, J.; Miller, I.; Baxa, J.; Lopera, J.; Kerby, R. L.; Rey, F. E.; Kwan, J. C. Autometa: Automated extraction of microbial genomes from individual shotgun metagenomes. Nucleic Acids Research, 2019. DOI: https://doi.org/10.1093/nar/gkz148
Miller, I. J.; Rees, E. R.; Ross, J.; Miller, I.; Baxa, J.; Lopera, J.; Kerby, R. L.; Rey, F. E.; Kwan, J. C. Autometa: Automated extraction of microbial genomes from individual shotgun metagenomes. Nucleic Acids Research, 2019. DOI: https://doi.org/10.1093/nar/gkz148
getting-started nextflow-workflow bash-workflow bash-step-by-step-tutorial databases examining-results benchmarking installation autometa-python-api scripts/usage how-to-contribute Autometa_modules/modules legacy-autometa license
If you like Autometa, visit our lab website to find out more about our research.
For suggestions, queries or appreciation feel free to contact Dr. Jason Kwan at jason.kwan@wisc.edu
For suggestions, queries or appreciation feel free to contact Dr. Jason Kwan at jason.kwan@wisc.edu
genindexmodindexsearch