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For some reason Github squishes the large tables, when "Previewing" the tables appear fine |
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This is an example of outputs/chached files of the Autometa pipeline as it currently stands.
AUTOMETA:LENGTH_FILTER
Directory /work/82/2c50226fc67a53b482a2dbaf5ce7fc contains 1 symlink and 3 files
metagenome.fna.gz
(symlink)metagenome.filtered.fna
metagenome.gc_content.tsv
metagenome.stats.tsv
AUTOMETA:KMER_COVERAGE
Directory /work/f3/2d16ee09ea11890d95a364d90492ac contains 1 symlink and 1 files
AUTOMETA:ORFS
Directory /work/75/a7f913adb91087ac75e67d9f63e32b contains 1 symlink and 2 files
AUTOMETA:MARKERS
Directory /work/be/6826b861f1427869d2f47ec92f12bc contains 1 symlink and 2 files
AUTOMETA:TAXON_ASSIGNMENT:DIAMOND
Directory /work/d4/a540329889754b3bc387bfdfe67d7a contains 1 symlink and 1 files
NODE_673_length_25618_cov_223.34_2 KMV72573.1 100 164 0 0 2 165 1 164 2.62e-118 331
AUTOMETA:TAXON_ASSIGNMENT:LCA
Directory /work/74/d948ac2f013262e69f9e2d61bccf96 contains 1 symlink and 1 files
metagenome.blastp.tsv (symlink)
NODE_673_length_25618_cov_223.34_2 KMV72573.1 100 164 0 0 2 165 1 164 2.62e-118 331
metagenome.lca.tsv
AUTOMETA:TAXON_ASSIGNMENT:MAJORITY_VOTE
Directory /work/79/8d8c5b5f86a0de68a6f3b967bf2143 contains 1 symlink and 1 files
AUTOMETA:TAXON_ASSIGNMENT:SPLIT_KINGDOMS
Directory /work/48/2b24a416d54b23bb0521df140dbc83 contains 2 symlink and 3 files
metagenome.archaea.fna
metagenome.bacteria.fna
AUTOMETA:KMERS (counting kmers for metagenome)
Directory /work/a3/6b4f030b6090a147d09644bbdf3c33 contains 1 symlink and 3 files
AUTOMETA:BINNING (Performing Autometa binning)
Directory /work/be/a2856ecdf279c8afe2cafe40e4f909 contains 5 symlink and 2 files
See above process outputs for what's contained in these symlinks
AUTOMETA:UNCLUSTERED_RECRUITMENT (Performing Autometa unclustered recruitment)
Directory /work/9f/7baa5342eb4907a9b60ae0dc676489 contains 4 symlink and 3 files
See above process outputs for what's contained in these symlinks
AUTOMETA:BINNING_SUMMARY (Binning summary for metagenome)
Directory /work/56/a965a4956cb86cc75bdb37304fbb5a contains 4 symlink and 2 files and 1 directory
metabins/
metabin_stats.tsv
See above process outputs for what's contained in these symlinks
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