Import error- undefined symbol: __gmpq_add

[nambiarnik]

When I'm importing memsurfer, I get the following error:

ImportError: /home/nambinik/miniconda3/lib/python3.11/site-packages/memsurfer-1.1.0-py3.11-linux-x86_64.egg/memsurfer/_memsurfer_cmod.so: undefined symbol: __gmpq_add

I believe this might be due to the GMP library not being linked,

With inspiration from an earlier question #3 I added the libgmp libraries to setup.py and reinstalled memsurfer.

Specifically changed lines 228,234 and 235

include_dirs=[PATH_PM, numpy.get_include(),
PATHS['boost']['include'],
PATHS['eigen']['include'],
PATHS['cgal']['include'],
'/opt/local/include','/usr/include/x86_64-linux-gnu'
],
LIBS_EXT.append('gmp')
libraries=LIBS_EXT,
library_dirs=[PATHS['cgal']['lib'],'/usr/lib/x86_64-linux-gnu/']

Still get the same error though. How would one go about getting around this error?

Best
Nikhil

[andreashlarsen]

and the same issue as #24
I just tried to install again with a new student, starting the installation from scratch, but got the same error.

[lunamorrow]

Having the same error installing from scratch. I'm trying to set it up for someone else in my lab. She really wants to use and access Memsurfer for analysis so it would be great if someone can look into this error ASAP please!