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TestDensitySelfThinning.cpp
1099 lines (1049 loc) · 42.1 KB
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TestDensitySelfThinning.cpp
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//---------------------------------------------------------------------------
// TestDensitySelfThinning.cpp
//---------------------------------------------------------------------------
#include "TestDensitySelfThinning.h"
#include <gtest/gtest.h>
#include "SimManager.h"
#include "TreePopulation.h"
#include "BehaviorBase.h"
#include <fstream>
#include <math.h>
/////////////////////////////////////////////////////////////////////////////
// TestNormalProcessing()
/////////////////////////////////////////////////////////////////////////////
TEST(DensitySelfThinning, TestNormalProcessing) {
clPopulationBase * p_oTemp;
clTreePopulation * p_oPop;
clTreeSearch *p_oAllTrees;
clTree *p_oTree;
float fDiam;
int **p_iTreeCount;
int i, j, iNumSpecies, iNumTypes;
clSimManager * p_oSimManager = new clSimManager( 7, 1, "" );
try {
// Load our test file and get our tree population pointers
p_oSimManager->ReadFile( WriteDensitySelfThinningXMLFile1() );
p_oTemp = p_oSimManager->GetPopulationObject( "treepopulation" );
p_oPop = ( clTreePopulation * ) p_oTemp;
iNumSpecies = p_oPop->GetNumberOfSpecies();
iNumTypes = p_oPop->GetNumberOfTypes();
// Set up our tree count array
p_iTreeCount = new int*[iNumSpecies];
for (i = 0; i < iNumSpecies; i++) {
p_iTreeCount[i] = new int[iNumTypes];
for (j = 0; j < iNumTypes; j++) {
p_iTreeCount[i][j] = 0;
}
}
// Create 100 of each kind of tree affected by mortality
// Seedlings of Species 1
fDiam = 0.01;
for (i = 0; i < 100; i++)
p_oTree = p_oPop->CreateTree(1, 1, 0, clTreePopulation::seedling, fDiam);
// Saplings of Species 1
fDiam = 2.2;
for (i = 0; i < 100; i++)
p_oTree = p_oPop->CreateTree(1, 1, 0, clTreePopulation::sapling, fDiam);
// Initial conditions count
p_oAllTrees = p_oPop->Find("all");
p_oTree = p_oAllTrees->NextTree();
while (p_oTree) {
p_iTreeCount[p_oTree->GetSpecies()][p_oTree->GetType()]++;
p_oTree = p_oAllTrees->NextTree();
}
EXPECT_EQ(p_iTreeCount[0][clTreePopulation::seedling], 100);
EXPECT_EQ(p_iTreeCount[0][clTreePopulation::sapling], 100);
// Run for one timestep
p_oSimManager->RunSim(1);
// Count the remaining trees
for (i = 0; i < iNumSpecies; i++) {
for (j = 0; j < iNumTypes; j++) {
p_iTreeCount[i][j] = 0;
}
}
p_oAllTrees = p_oPop->Find("all");
p_oTree = p_oAllTrees->NextTree();
while (p_oTree) {
p_iTreeCount[p_oTree->GetSpecies()][p_oTree->GetType()]++;
p_oTree = p_oAllTrees->NextTree();
}
// Make sure they are as expected
// Seedlings of Species 1
ASSERT_TRUE((p_iTreeCount[0][clTreePopulation::seedling] >= 89) && (p_iTreeCount[0][clTreePopulation::seedling] <= 100) );
// Saplings of Species 1
ASSERT_TRUE((p_iTreeCount[0][clTreePopulation::sapling] >= 89) && (p_iTreeCount[0][clTreePopulation::sapling] <= 100));
for (i = 0; i < iNumSpecies; i++) delete[] p_iTreeCount[i];
delete[] p_iTreeCount;
delete p_oSimManager;
} catch (modelErr &e) {
delete[] p_iTreeCount;
delete p_oSimManager;
FAIL() << "Testing failed in function: " << e.sFunction << " with message: " << e.sMoreInfo;
}
}
/////////////////////////////////////////////////////////////////////////////
// TestErrorProcessing()
/////////////////////////////////////////////////////////////////////////////
TEST(DensitySelfThinning, TestErrorProcessing) {
clSimManager * p_oSimManager = new clSimManager( 7, 1, "" );
try
{
p_oSimManager->ReadFile (WriteDensitySelfThinningXMLErrorFile1());
FAIL() << "TestDensitySelfThinning error processing didn't catch error for WriteDensitySelfThinningXMLErrorFile1.";
}
catch (modelErr& err)
{
if (err.sFunction.compare("clDensitySelfThinning::DoShellSetup" ) != 0)
{
FAIL() << "TestDensitySelfThinning error processing caught the wrong error for WriteDensitySelfThinningXMLErrorFile1.";
}
;
}
try
{
p_oSimManager->ReadFile (WriteDensitySelfThinningXMLErrorFile2());
FAIL() << "TestDensitySelfThinning error processing didn't catch error for WriteDensitySelfThinningXMLErrorFile2.";
}
catch (modelErr& err)
{
if (err.sFunction.compare("clDensitySelfThinning::DoShellSetup" ) != 0)
{
FAIL() << "TestDensitySelfThinning error processing caught the wrong error for WriteDensitySelfThinningXMLErrorFile2.";
}
;
}
try
{
p_oSimManager->ReadFile (WriteDensitySelfThinningXMLErrorFile3());
FAIL() << "TestDensitySelfThinning error processing didn't catch error for WriteDensitySelfThinningXMLErrorFile3.";
}
catch (modelErr& err)
{
if (err.sFunction.compare("clDensitySelfThinning::DoShellSetup" ) != 0)
{
FAIL() << "TestDensitySelfThinning error processing caught the wrong error for WriteDensitySelfThinningXMLErrorFile3.";
}
;
}
try
{
p_oSimManager->ReadFile (WriteDensitySelfThinningXMLErrorFile4());
FAIL() << "TestDensitySelfThinning error processing didn't catch error for WriteDensitySelfThinningXMLErrorFile4.";
}
catch (modelErr& err)
{
if (err.sFunction.compare("clDensitySelfThinning::DoShellSetup" ) != 0)
{
FAIL() << "TestDensitySelfThinning error processing caught the wrong error for WriteDensitySelfThinningXMLErrorFile4.";
}
;
}
try
{
p_oSimManager->ReadFile (WriteDensitySelfThinningXMLErrorFile5());
FAIL() << "TestDensitySelfThinning error processing didn't catch error for WriteDensitySelfThinningXMLErrorFile5.";
}
catch (modelErr& err)
{
if (err.sFunction.compare("clDensitySelfThinning::DoShellSetup" ) != 0)
{
FAIL() << "TestDensitySelfThinning error processing caught the wrong error for WriteDensitySelfThinningXMLErrorFile5.";
}
;
}
try
{
p_oSimManager->ReadFile (WriteDensitySelfThinningXMLErrorFile6());
FAIL() << "TestDensitySelfThinning error processing didn't catch error for WriteDensitySelfThinningXMLErrorFile6.";
}
catch (modelErr& err)
{
if (err.sFunction.compare("clDensitySelfThinning::DoShellSetup" ) != 0)
{
FAIL() << "TestDensitySelfThinning error processing caught the wrong error for WriteDensitySelfThinningXMLErrorFile6.";
}
;
}
delete p_oSimManager;
}
/////////////////////////////////////////////////////////////////////////////
// WriteDensitySelfThinningXMLFile1()
// Good parameter file
/////////////////////////////////////////////////////////////////////////////
const char* WriteDensitySelfThinningXMLFile1()
{
using namespace std;
const char *cFileString = "TestFile1.xml";
//Open file to write to
fstream oOut;
oOut.open(cFileString, ios::out | ios::trunc);
oOut << "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>"
<< "<paramFile fileCode=\"06010101\">"
<< "<plot>"
<< "<timesteps>2</timesteps>"
<< "<rt_timestep>0</rt_timestep>"
<< "<randomSeed>1</randomSeed>"
<< "<yearsPerTimestep>1.0</yearsPerTimestep>"
<< "<plot_lenX>100.0</plot_lenX>"
<< "<plot_lenY>100.0</plot_lenY>"
<< "<plot_precip_mm_yr>1150.645781</plot_precip_mm_yr>"
<< "<plot_temp_C>12.88171785</plot_temp_C>"
<< "<plot_latitude>0.0</plot_latitude>"
<< "</plot>"
<< "<trees>"
<< "<tr_speciesList>"
<< "<tr_species speciesName=\"Species_1\" />"
<< "</tr_speciesList>"
<< "<tr_seedDiam10Cm>0.1</tr_seedDiam10Cm>"
<< "<tr_minAdultDBH>"
<< "<tr_madVal species=\"Species_1\">10.0</tr_madVal>"
<< "</tr_minAdultDBH>"
<< "<tr_maxSeedlingHeight>"
<< "<tr_mshVal species=\"Species_1\">1.35</tr_mshVal>"
<< "</tr_maxSeedlingHeight>"
<< "</trees>"
<< "<allometry>"
<< "<tr_canopyHeight>"
<< "<tr_chVal species=\"Species_1\">40.0</tr_chVal>"
<< "</tr_canopyHeight>"
<< "<tr_stdAsympCrownRad>"
<< "<tr_sacrVal species=\"Species_1\">0.7</tr_sacrVal>"
<< "</tr_stdAsympCrownRad>"
<< "<tr_stdCrownRadExp>"
<< "<tr_screVal species=\"Species_1\">1.0</tr_screVal>"
<< "</tr_stdCrownRadExp>"
<< "<tr_stdMaxCrownRad>"
<< "<tr_smcrVal species=\"Species_1\">10</tr_smcrVal>"
<< "</tr_stdMaxCrownRad>"
<< "<tr_conversionDiam10ToDBH>"
<< "<tr_cdtdVal species=\"Species_1\">0.7</tr_cdtdVal>"
<< "</tr_conversionDiam10ToDBH>"
<< "<tr_interceptDiam10ToDBH>"
<< "<tr_idtdVal species=\"Species_1\">0</tr_idtdVal>"
<< "</tr_interceptDiam10ToDBH>"
<< "<tr_stdAsympCrownHt>"
<< "<tr_sachVal species=\"Species_1\">0.7</tr_sachVal>"
<< "</tr_stdAsympCrownHt>"
<< "<tr_stdCrownHtExp>"
<< "<tr_scheVal species=\"Species_1\">1.0</tr_scheVal>"
<< "</tr_stdCrownHtExp>"
<< "<tr_slopeOfHeight-Diam10>"
<< "<tr_sohdVal species=\"Species_1\">0.03</tr_sohdVal>"
<< "</tr_slopeOfHeight-Diam10>"
<< "<tr_slopeOfAsymHeight>"
<< "<tr_soahVal species=\"Species_1\">0.7</tr_soahVal>"
<< "</tr_slopeOfAsymHeight>"
<< "<tr_whatSeedlingHeightDiam>"
<< "<tr_wsehdVal species=\"Species_1\">0</tr_wsehdVal>"
<< "</tr_whatSeedlingHeightDiam>"
<< "<tr_whatSaplingHeightDiam>"
<< "<tr_wsahdVal species=\"Species_1\">0</tr_wsahdVal>"
<< "</tr_whatSaplingHeightDiam>"
<< "<tr_whatAdultHeightDiam>"
<< "<tr_wahdVal species=\"Species_1\">0</tr_wahdVal>"
<< "</tr_whatAdultHeightDiam>"
<< "<tr_whatAdultCrownRadDiam>"
<< "<tr_wacrdVal species=\"Species_1\">0</tr_wacrdVal>"
<< "</tr_whatAdultCrownRadDiam>"
<< "<tr_whatAdultCrownHeightHeight>"
<< "<tr_wachhVal species=\"Species_1\">0</tr_wachhVal>"
<< "</tr_whatAdultCrownHeightHeight>"
<< "<tr_whatSaplingCrownRadDiam>"
<< "<tr_wscrdVal species=\"Species_1\">0</tr_wscrdVal>"
<< "</tr_whatSaplingCrownRadDiam>"
<< "<tr_whatSaplingCrownHeightHeight>"
<< "<tr_wschhVal species=\"Species_1\">0</tr_wschhVal>"
<< "</tr_whatSaplingCrownHeightHeight>"
<< "</allometry>"
<< "<behaviorList>"
<< "<behavior>"
<< "<behaviorName>DensitySelfThinning</behaviorName>"
<< "<version>1.0</version>"
<< "<listPosition>1</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Sapling\" />"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>RemoveDead</behaviorName>"
<< "<version>2.0</version>"
<< "<listPosition>2</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Sapling\" />"
<< "</behavior>"
<< "</behaviorList>"
<< "<DensitySelfThinning1>"
<< "<mo_selfThinRadius>"
<< "<mo_strVal species=\"Species_1\">9</mo_strVal>"
<< "</mo_selfThinRadius>"
<< "<mo_minDensityForMort>"
<< "<mo_mdfmVal species=\"Species_1\">0</mo_mdfmVal>"
<< "</mo_minDensityForMort>"
<< "<mo_selfThinAsymptote>"
<< "<mo_staVal species=\"Species_1\">0.1019</mo_staVal>"
<< "</mo_selfThinAsymptote>"
<< "<mo_selfThinDiamEffect>"
<< "<mo_stdieVal species=\"Species_1\">0.5391</mo_stdieVal>"
<< "</mo_selfThinDiamEffect>"
<< "<mo_selfThinDensityEffect>"
<< "<mo_stdeeVal species=\"Species_1\">0.00000877</mo_stdeeVal>"
<< "</mo_selfThinDensityEffect>"
<< "</DensitySelfThinning1>"
<< "</paramFile>";
oOut.close();
return cFileString;
}
/////////////////////////////////////////////////////////////////////////////
// WriteDensitySelfThinningXMLErrorFile1()
// Error parameter file - more than one year per timestep
/////////////////////////////////////////////////////////////////////////////
const char* WriteDensitySelfThinningXMLErrorFile1()
{
using namespace std;
const char *cFileString = "TestFile1.xml";
//Open file to write to
fstream oOut;
oOut.open(cFileString, ios::out | ios::trunc);
oOut << "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>"
<< "<paramFile fileCode=\"06010101\">"
<< "<plot>"
<< "<timesteps>2</timesteps>"
<< "<rt_timestep>0</rt_timestep>"
<< "<randomSeed>0</randomSeed>"
<< "<yearsPerTimestep>5.0</yearsPerTimestep>"
<< "<plot_lenX>100.0</plot_lenX>"
<< "<plot_lenY>100.0</plot_lenY>"
<< "<plot_precip_mm_yr>1150.645781</plot_precip_mm_yr>"
<< "<plot_temp_C>12.88171785</plot_temp_C>"
<< "<plot_latitude>0.0</plot_latitude>"
<< "</plot>"
<< "<trees>"
<< "<tr_speciesList>"
<< "<tr_species speciesName=\"Species_1\" />"
<< "</tr_speciesList>"
<< "<tr_seedDiam10Cm>0.1</tr_seedDiam10Cm>"
<< "<tr_minAdultDBH>"
<< "<tr_madVal species=\"Species_1\">10.0</tr_madVal>"
<< "</tr_minAdultDBH>"
<< "<tr_maxSeedlingHeight>"
<< "<tr_mshVal species=\"Species_1\">1.35</tr_mshVal>"
<< "</tr_maxSeedlingHeight>"
<< "</trees>"
<< "<allometry>"
<< "<tr_canopyHeight>"
<< "<tr_chVal species=\"Species_1\">40.0</tr_chVal>"
<< "</tr_canopyHeight>"
<< "<tr_stdAsympCrownRad>"
<< "<tr_sacrVal species=\"Species_1\">0.7</tr_sacrVal>"
<< "</tr_stdAsympCrownRad>"
<< "<tr_stdCrownRadExp>"
<< "<tr_screVal species=\"Species_1\">1.0</tr_screVal>"
<< "</tr_stdCrownRadExp>"
<< "<tr_stdMaxCrownRad>"
<< "<tr_smcrVal species=\"Species_1\">10</tr_smcrVal>"
<< "</tr_stdMaxCrownRad>"
<< "<tr_conversionDiam10ToDBH>"
<< "<tr_cdtdVal species=\"Species_1\">0.7</tr_cdtdVal>"
<< "</tr_conversionDiam10ToDBH>"
<< "<tr_interceptDiam10ToDBH>"
<< "<tr_idtdVal species=\"Species_1\">0</tr_idtdVal>"
<< "</tr_interceptDiam10ToDBH>"
<< "<tr_stdAsympCrownHt>"
<< "<tr_sachVal species=\"Species_1\">0.7</tr_sachVal>"
<< "</tr_stdAsympCrownHt>"
<< "<tr_stdCrownHtExp>"
<< "<tr_scheVal species=\"Species_1\">1.0</tr_scheVal>"
<< "</tr_stdCrownHtExp>"
<< "<tr_slopeOfHeight-Diam10>"
<< "<tr_sohdVal species=\"Species_1\">0.03</tr_sohdVal>"
<< "</tr_slopeOfHeight-Diam10>"
<< "<tr_slopeOfAsymHeight>"
<< "<tr_soahVal species=\"Species_1\">0.7</tr_soahVal>"
<< "</tr_slopeOfAsymHeight>"
<< "<tr_whatSeedlingHeightDiam>"
<< "<tr_wsehdVal species=\"Species_1\">0</tr_wsehdVal>"
<< "</tr_whatSeedlingHeightDiam>"
<< "<tr_whatSaplingHeightDiam>"
<< "<tr_wsahdVal species=\"Species_1\">0</tr_wsahdVal>"
<< "</tr_whatSaplingHeightDiam>"
<< "<tr_whatAdultHeightDiam>"
<< "<tr_wahdVal species=\"Species_1\">0</tr_wahdVal>"
<< "</tr_whatAdultHeightDiam>"
<< "<tr_whatAdultCrownRadDiam>"
<< "<tr_wacrdVal species=\"Species_1\">0</tr_wacrdVal>"
<< "</tr_whatAdultCrownRadDiam>"
<< "<tr_whatAdultCrownHeightHeight>"
<< "<tr_wachhVal species=\"Species_1\">0</tr_wachhVal>"
<< "</tr_whatAdultCrownHeightHeight>"
<< "<tr_whatSaplingCrownRadDiam>"
<< "<tr_wscrdVal species=\"Species_1\">0</tr_wscrdVal>"
<< "</tr_whatSaplingCrownRadDiam>"
<< "<tr_whatSaplingCrownHeightHeight>"
<< "<tr_wschhVal species=\"Species_1\">0</tr_wschhVal>"
<< "</tr_whatSaplingCrownHeightHeight>"
<< "</allometry>"
<< "<behaviorList>"
<< "<behavior>"
<< "<behaviorName>DensitySelfThinning</behaviorName>"
<< "<version>1.0</version>"
<< "<listPosition>1</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Sapling\" />"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>RemoveDead</behaviorName>"
<< "<version>2.0</version>"
<< "<listPosition>2</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Sapling\" />"
<< "</behavior>"
<< "</behaviorList>"
<< "<DensitySelfThinning1>"
<< "<mo_selfThinRadius>"
<< "<mo_strVal species=\"Species_1\">0.5</mo_strVal>"
<< "</mo_selfThinRadius>"
<< "<mo_minDensityForMort>"
<< "<mo_mdfmVal species=\"Species_1\">0.55</mo_mdfmVal>"
<< "</mo_minDensityForMort>"
<< "<mo_selfThinAsymptote>"
<< "<mo_staVal species=\"Species_1\">0.55</mo_staVal>"
<< "</mo_selfThinAsymptote>"
<< "<mo_selfThinDiamEffect>"
<< "<mo_stdieVal species=\"Species_1\">0.55</mo_stdieVal>"
<< "</mo_selfThinDiamEffect>"
<< "<mo_selfThinDensityEffect>"
<< "<mo_stdeeVal species=\"Species_1\">0.55</mo_stdeeVal>"
<< "</mo_selfThinDensityEffect>"
<< "</DensitySelfThinning1>"
<< "</paramFile>";
oOut.close();
return cFileString;
}
/////////////////////////////////////////////////////////////////////////////
// WriteDensitySelfThinningXMLErrorFile2()
/////////////////////////////////////////////////////////////////////////////
//Error parameter file - passes adults to this behavior
const char* WriteDensitySelfThinningXMLErrorFile2()
{
using namespace std;
const char *cFileString = "TestFile1.xml";
//Open file to write to
fstream oOut;
oOut.open(cFileString, ios::out | ios::trunc);
oOut << "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>"
<< "<paramFile fileCode=\"06010101\">"
<< "<plot>"
<< "<timesteps>2</timesteps>"
<< "<rt_timestep>0</rt_timestep>"
<< "<randomSeed>0</randomSeed>"
<< "<yearsPerTimestep>1.0</yearsPerTimestep>"
<< "<plot_lenX>100.0</plot_lenX>"
<< "<plot_lenY>100.0</plot_lenY>"
<< "<plot_precip_mm_yr>1150.645781</plot_precip_mm_yr>"
<< "<plot_temp_C>12.88171785</plot_temp_C>"
<< "<plot_latitude>0.0</plot_latitude>"
<< "</plot>"
<< "<trees>"
<< "<tr_speciesList>"
<< "<tr_species speciesName=\"Species_1\" />"
<< "</tr_speciesList>"
<< "<tr_seedDiam10Cm>0.1</tr_seedDiam10Cm>"
<< "<tr_minAdultDBH>"
<< "<tr_madVal species=\"Species_1\">10.0</tr_madVal>"
<< "</tr_minAdultDBH>"
<< "<tr_maxSeedlingHeight>"
<< "<tr_mshVal species=\"Species_1\">1.35</tr_mshVal>"
<< "</tr_maxSeedlingHeight>"
<< "</trees>"
<< "<allometry>"
<< "<tr_canopyHeight>"
<< "<tr_chVal species=\"Species_1\">40.0</tr_chVal>"
<< "</tr_canopyHeight>"
<< "<tr_stdAsympCrownRad>"
<< "<tr_sacrVal species=\"Species_1\">0.7</tr_sacrVal>"
<< "</tr_stdAsympCrownRad>"
<< "<tr_stdCrownRadExp>"
<< "<tr_screVal species=\"Species_1\">1.0</tr_screVal>"
<< "</tr_stdCrownRadExp>"
<< "<tr_stdMaxCrownRad>"
<< "<tr_smcrVal species=\"Species_1\">10</tr_smcrVal>"
<< "</tr_stdMaxCrownRad>"
<< "<tr_conversionDiam10ToDBH>"
<< "<tr_cdtdVal species=\"Species_1\">0.7</tr_cdtdVal>"
<< "</tr_conversionDiam10ToDBH>"
<< "<tr_interceptDiam10ToDBH>"
<< "<tr_idtdVal species=\"Species_1\">0</tr_idtdVal>"
<< "</tr_interceptDiam10ToDBH>"
<< "<tr_stdAsympCrownHt>"
<< "<tr_sachVal species=\"Species_1\">0.7</tr_sachVal>"
<< "</tr_stdAsympCrownHt>"
<< "<tr_stdCrownHtExp>"
<< "<tr_scheVal species=\"Species_1\">1.0</tr_scheVal>"
<< "</tr_stdCrownHtExp>"
<< "<tr_slopeOfHeight-Diam10>"
<< "<tr_sohdVal species=\"Species_1\">0.03</tr_sohdVal>"
<< "</tr_slopeOfHeight-Diam10>"
<< "<tr_slopeOfAsymHeight>"
<< "<tr_soahVal species=\"Species_1\">0.7</tr_soahVal>"
<< "</tr_slopeOfAsymHeight>"
<< "<tr_whatSeedlingHeightDiam>"
<< "<tr_wsehdVal species=\"Species_1\">0</tr_wsehdVal>"
<< "</tr_whatSeedlingHeightDiam>"
<< "<tr_whatSaplingHeightDiam>"
<< "<tr_wsahdVal species=\"Species_1\">0</tr_wsahdVal>"
<< "</tr_whatSaplingHeightDiam>"
<< "<tr_whatAdultHeightDiam>"
<< "<tr_wahdVal species=\"Species_1\">0</tr_wahdVal>"
<< "</tr_whatAdultHeightDiam>"
<< "<tr_whatAdultCrownRadDiam>"
<< "<tr_wacrdVal species=\"Species_1\">0</tr_wacrdVal>"
<< "</tr_whatAdultCrownRadDiam>"
<< "<tr_whatAdultCrownHeightHeight>"
<< "<tr_wachhVal species=\"Species_1\">0</tr_wachhVal>"
<< "</tr_whatAdultCrownHeightHeight>"
<< "<tr_whatSaplingCrownRadDiam>"
<< "<tr_wscrdVal species=\"Species_1\">0</tr_wscrdVal>"
<< "</tr_whatSaplingCrownRadDiam>"
<< "<tr_whatSaplingCrownHeightHeight>"
<< "<tr_wschhVal species=\"Species_1\">0</tr_wschhVal>"
<< "</tr_whatSaplingCrownHeightHeight>"
<< "</allometry>"
<< "<behaviorList>"
<< "<behavior>"
<< "<behaviorName>DensitySelfThinning</behaviorName>"
<< "<version>1.0</version>"
<< "<listPosition>1</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Adult\" />"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>RemoveDead</behaviorName>"
<< "<version>2.0</version>"
<< "<listPosition>2</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Adult\" />"
<< "</behavior>"
<< "</behaviorList>"
<< "<DensitySelfThinning1>"
<< "<mo_selfThinRadius>"
<< "<mo_strVal species=\"Species_1\">0.5</mo_strVal>"
<< "</mo_selfThinRadius>"
<< "<mo_minDensityForMort>"
<< "<mo_mdfmVal species=\"Species_1\">0.55</mo_mdfmVal>"
<< "</mo_minDensityForMort>"
<< "<mo_selfThinAsymptote>"
<< "<mo_staVal species=\"Species_1\">0.55</mo_staVal>"
<< "</mo_selfThinAsymptote>"
<< "<mo_selfThinDiamEffect>"
<< "<mo_stdieVal species=\"Species_1\">0.55</mo_stdieVal>"
<< "</mo_selfThinDiamEffect>"
<< "<mo_selfThinDensityEffect>"
<< "<mo_stdeeVal species=\"Species_1\">0.55</mo_stdeeVal>"
<< "</mo_selfThinDensityEffect>"
<< "</DensitySelfThinning1>"
<< "</paramFile>";
oOut.close();
return cFileString;
}
/////////////////////////////////////////////////////////////////////////////
// WriteDensitySelfThinningXMLErrorFile3()
/////////////////////////////////////////////////////////////////////////////
//Error parameter file - bad parameter
const char* WriteDensitySelfThinningXMLErrorFile3()
{
using namespace std;
const char *cFileString = "TestFile1.xml";
//Open file to write to
fstream oOut;
oOut.open(cFileString, ios::out | ios::trunc);
oOut << "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>"
<< "<paramFile fileCode=\"06010101\">"
<< "<plot>"
<< "<timesteps>2</timesteps>"
<< "<rt_timestep>0</rt_timestep>"
<< "<randomSeed>0</randomSeed>"
<< "<yearsPerTimestep>1.0</yearsPerTimestep>"
<< "<plot_lenX>100.0</plot_lenX>"
<< "<plot_lenY>100.0</plot_lenY>"
<< "<plot_precip_mm_yr>1150.645781</plot_precip_mm_yr>"
<< "<plot_temp_C>12.88171785</plot_temp_C>"
<< "<plot_latitude>0.0</plot_latitude>"
<< "</plot>"
<< "<trees>"
<< "<tr_speciesList>"
<< "<tr_species speciesName=\"Species_1\" />"
<< "</tr_speciesList>"
<< "<tr_seedDiam10Cm>0.1</tr_seedDiam10Cm>"
<< "<tr_minAdultDBH>"
<< "<tr_madVal species=\"Species_1\">10.0</tr_madVal>"
<< "</tr_minAdultDBH>"
<< "<tr_maxSeedlingHeight>"
<< "<tr_mshVal species=\"Species_1\">1.35</tr_mshVal>"
<< "</tr_maxSeedlingHeight>"
<< "</trees>"
<< "<allometry>"
<< "<tr_canopyHeight>"
<< "<tr_chVal species=\"Species_1\">40.0</tr_chVal>"
<< "</tr_canopyHeight>"
<< "<tr_stdAsympCrownRad>"
<< "<tr_sacrVal species=\"Species_1\">0.7</tr_sacrVal>"
<< "</tr_stdAsympCrownRad>"
<< "<tr_stdCrownRadExp>"
<< "<tr_screVal species=\"Species_1\">1.0</tr_screVal>"
<< "</tr_stdCrownRadExp>"
<< "<tr_stdMaxCrownRad>"
<< "<tr_smcrVal species=\"Species_1\">10</tr_smcrVal>"
<< "</tr_stdMaxCrownRad>"
<< "<tr_conversionDiam10ToDBH>"
<< "<tr_cdtdVal species=\"Species_1\">0.7</tr_cdtdVal>"
<< "</tr_conversionDiam10ToDBH>"
<< "<tr_interceptDiam10ToDBH>"
<< "<tr_idtdVal species=\"Species_1\">0</tr_idtdVal>"
<< "</tr_interceptDiam10ToDBH>"
<< "<tr_stdAsympCrownHt>"
<< "<tr_sachVal species=\"Species_1\">0.7</tr_sachVal>"
<< "</tr_stdAsympCrownHt>"
<< "<tr_stdCrownHtExp>"
<< "<tr_scheVal species=\"Species_1\">1.0</tr_scheVal>"
<< "</tr_stdCrownHtExp>"
<< "<tr_slopeOfHeight-Diam10>"
<< "<tr_sohdVal species=\"Species_1\">0.03</tr_sohdVal>"
<< "</tr_slopeOfHeight-Diam10>"
<< "<tr_slopeOfAsymHeight>"
<< "<tr_soahVal species=\"Species_1\">0.7</tr_soahVal>"
<< "</tr_slopeOfAsymHeight>"
<< "<tr_whatSeedlingHeightDiam>"
<< "<tr_wsehdVal species=\"Species_1\">0</tr_wsehdVal>"
<< "</tr_whatSeedlingHeightDiam>"
<< "<tr_whatSaplingHeightDiam>"
<< "<tr_wsahdVal species=\"Species_1\">0</tr_wsahdVal>"
<< "</tr_whatSaplingHeightDiam>"
<< "<tr_whatAdultHeightDiam>"
<< "<tr_wahdVal species=\"Species_1\">0</tr_wahdVal>"
<< "</tr_whatAdultHeightDiam>"
<< "<tr_whatAdultCrownRadDiam>"
<< "<tr_wacrdVal species=\"Species_1\">0</tr_wacrdVal>"
<< "</tr_whatAdultCrownRadDiam>"
<< "<tr_whatAdultCrownHeightHeight>"
<< "<tr_wachhVal species=\"Species_1\">0</tr_wachhVal>"
<< "</tr_whatAdultCrownHeightHeight>"
<< "<tr_whatSaplingCrownRadDiam>"
<< "<tr_wscrdVal species=\"Species_1\">0</tr_wscrdVal>"
<< "</tr_whatSaplingCrownRadDiam>"
<< "<tr_whatSaplingCrownHeightHeight>"
<< "<tr_wschhVal species=\"Species_1\">0</tr_wschhVal>"
<< "</tr_whatSaplingCrownHeightHeight>"
<< "</allometry>"
<< "<behaviorList>"
<< "<behavior>"
<< "<behaviorName>DensitySelfThinning</behaviorName>"
<< "<version>1.0</version>"
<< "<listPosition>1</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Sapling\" />"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>RemoveDead</behaviorName>"
<< "<version>2.0</version>"
<< "<listPosition>2</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Sapling\" />"
<< "</behavior>"
<< "</behaviorList>"
<< "<DensitySelfThinning1>"
<< "<mo_selfThinRadius>"
<< "<mo_strVal species=\"Species_1\">-0.5</mo_strVal>"
<< "</mo_selfThinRadius>"
<< "<mo_minDensityForMort>"
<< "<mo_mdfmVal species=\"Species_1\">0.55</mo_mdfmVal>"
<< "</mo_minDensityForMort>"
<< "<mo_selfThinAsymptote>"
<< "<mo_staVal species=\"Species_1\">0.55</mo_staVal>"
<< "</mo_selfThinAsymptote>"
<< "<mo_selfThinDiamEffect>"
<< "<mo_stdieVal species=\"Species_1\">0.55</mo_stdieVal>"
<< "</mo_selfThinDiamEffect>"
<< "<mo_selfThinDensityEffect>"
<< "<mo_stdeeVal species=\"Species_1\">0.55</mo_stdeeVal>"
<< "</mo_selfThinDensityEffect>"
<< "</DensitySelfThinning1>"
<< "</paramFile>";
oOut.close();
return cFileString;
}
/////////////////////////////////////////////////////////////////////////////
// WriteDensitySelfThinningXMLErrorFile4()
/////////////////////////////////////////////////////////////////////////////
//Error parameter file - bad parameter
const char* WriteDensitySelfThinningXMLErrorFile4()
{
using namespace std;
const char *cFileString = "TestFile1.xml";
//Open file to write to
fstream oOut;
oOut.open(cFileString, ios::out | ios::trunc);
oOut << "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>"
<< "<paramFile fileCode=\"06010101\">"
<< "<plot>"
<< "<timesteps>2</timesteps>"
<< "<rt_timestep>0</rt_timestep>"
<< "<randomSeed>0</randomSeed>"
<< "<yearsPerTimestep>1.0</yearsPerTimestep>"
<< "<plot_lenX>100.0</plot_lenX>"
<< "<plot_lenY>100.0</plot_lenY>"
<< "<plot_precip_mm_yr>1150.645781</plot_precip_mm_yr>"
<< "<plot_temp_C>12.88171785</plot_temp_C>"
<< "<plot_latitude>0.0</plot_latitude>"
<< "</plot>"
<< "<trees>"
<< "<tr_speciesList>"
<< "<tr_species speciesName=\"Species_1\" />"
<< "</tr_speciesList>"
<< "<tr_seedDiam10Cm>0.1</tr_seedDiam10Cm>"
<< "<tr_minAdultDBH>"
<< "<tr_madVal species=\"Species_1\">10.0</tr_madVal>"
<< "</tr_minAdultDBH>"
<< "<tr_maxSeedlingHeight>"
<< "<tr_mshVal species=\"Species_1\">1.35</tr_mshVal>"
<< "</tr_maxSeedlingHeight>"
<< "</trees>"
<< "<allometry>"
<< "<tr_canopyHeight>"
<< "<tr_chVal species=\"Species_1\">40.0</tr_chVal>"
<< "</tr_canopyHeight>"
<< "<tr_stdAsympCrownRad>"
<< "<tr_sacrVal species=\"Species_1\">0.7</tr_sacrVal>"
<< "</tr_stdAsympCrownRad>"
<< "<tr_stdCrownRadExp>"
<< "<tr_screVal species=\"Species_1\">1.0</tr_screVal>"
<< "</tr_stdCrownRadExp>"
<< "<tr_stdMaxCrownRad>"
<< "<tr_smcrVal species=\"Species_1\">10</tr_smcrVal>"
<< "</tr_stdMaxCrownRad>"
<< "<tr_conversionDiam10ToDBH>"
<< "<tr_cdtdVal species=\"Species_1\">0.7</tr_cdtdVal>"
<< "</tr_conversionDiam10ToDBH>"
<< "<tr_interceptDiam10ToDBH>"
<< "<tr_idtdVal species=\"Species_1\">0</tr_idtdVal>"
<< "</tr_interceptDiam10ToDBH>"
<< "<tr_stdAsympCrownHt>"
<< "<tr_sachVal species=\"Species_1\">0.7</tr_sachVal>"
<< "</tr_stdAsympCrownHt>"
<< "<tr_stdCrownHtExp>"
<< "<tr_scheVal species=\"Species_1\">1.0</tr_scheVal>"
<< "</tr_stdCrownHtExp>"
<< "<tr_slopeOfHeight-Diam10>"
<< "<tr_sohdVal species=\"Species_1\">0.03</tr_sohdVal>"
<< "</tr_slopeOfHeight-Diam10>"
<< "<tr_slopeOfAsymHeight>"
<< "<tr_soahVal species=\"Species_1\">0.7</tr_soahVal>"
<< "</tr_slopeOfAsymHeight>"
<< "<tr_whatSeedlingHeightDiam>"
<< "<tr_wsehdVal species=\"Species_1\">0</tr_wsehdVal>"
<< "</tr_whatSeedlingHeightDiam>"
<< "<tr_whatSaplingHeightDiam>"
<< "<tr_wsahdVal species=\"Species_1\">0</tr_wsahdVal>"
<< "</tr_whatSaplingHeightDiam>"
<< "<tr_whatAdultHeightDiam>"
<< "<tr_wahdVal species=\"Species_1\">0</tr_wahdVal>"
<< "</tr_whatAdultHeightDiam>"
<< "<tr_whatAdultCrownRadDiam>"
<< "<tr_wacrdVal species=\"Species_1\">0</tr_wacrdVal>"
<< "</tr_whatAdultCrownRadDiam>"
<< "<tr_whatAdultCrownHeightHeight>"
<< "<tr_wachhVal species=\"Species_1\">0</tr_wachhVal>"
<< "</tr_whatAdultCrownHeightHeight>"
<< "<tr_whatSaplingCrownRadDiam>"
<< "<tr_wscrdVal species=\"Species_1\">0</tr_wscrdVal>"
<< "</tr_whatSaplingCrownRadDiam>"
<< "<tr_whatSaplingCrownHeightHeight>"
<< "<tr_wschhVal species=\"Species_1\">0</tr_wschhVal>"
<< "</tr_whatSaplingCrownHeightHeight>"
<< "</allometry>"
<< "<behaviorList>"
<< "<behavior>"
<< "<behaviorName>DensitySelfThinning</behaviorName>"
<< "<version>1.0</version>"
<< "<listPosition>1</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Sapling\" />"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>RemoveDead</behaviorName>"
<< "<version>2.0</version>"
<< "<listPosition>2</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Sapling\" />"
<< "</behavior>"
<< "</behaviorList>"
<< "<DensitySelfThinning1>"
<< "<mo_selfThinRadius>"
<< "<mo_strVal species=\"Species_1\">0.5</mo_strVal>"
<< "</mo_selfThinRadius>"
<< "<mo_minDensityForMort>"
<< "<mo_mdfmVal species=\"Species_1\">-0.55</mo_mdfmVal>"
<< "</mo_minDensityForMort>"
<< "<mo_selfThinAsymptote>"
<< "<mo_staVal species=\"Species_1\">0.55</mo_staVal>"
<< "</mo_selfThinAsymptote>"
<< "<mo_selfThinDiamEffect>"
<< "<mo_stdieVal species=\"Species_1\">0.55</mo_stdieVal>"
<< "</mo_selfThinDiamEffect>"
<< "<mo_selfThinDensityEffect>"
<< "<mo_stdeeVal species=\"Species_1\">0.55</mo_stdeeVal>"
<< "</mo_selfThinDensityEffect>"
<< "</DensitySelfThinning1>"
<< "</paramFile>";
oOut.close();
return cFileString;
}
/////////////////////////////////////////////////////////////////////////////
// WriteDensitySelfThinningXMLErrorFile5()
/////////////////////////////////////////////////////////////////////////////
//Error parameter file - bad parameter
const char* WriteDensitySelfThinningXMLErrorFile5()
{
using namespace std;
const char *cFileString = "TestFile1.xml";
//Open file to write to
fstream oOut;
oOut.open(cFileString, ios::out | ios::trunc);
oOut << "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>"
<< "<paramFile fileCode=\"06010101\">"
<< "<plot>"
<< "<timesteps>2</timesteps>"
<< "<rt_timestep>0</rt_timestep>"
<< "<randomSeed>0</randomSeed>"
<< "<yearsPerTimestep>1.0</yearsPerTimestep>"
<< "<plot_lenX>100.0</plot_lenX>"
<< "<plot_lenY>100.0</plot_lenY>"
<< "<plot_precip_mm_yr>1150.645781</plot_precip_mm_yr>"
<< "<plot_temp_C>12.88171785</plot_temp_C>"
<< "<plot_latitude>0.0</plot_latitude>"
<< "</plot>"
<< "<trees>"
<< "<tr_speciesList>"
<< "<tr_species speciesName=\"Species_1\" />"
<< "</tr_speciesList>"
<< "<tr_seedDiam10Cm>0.1</tr_seedDiam10Cm>"
<< "<tr_minAdultDBH>"
<< "<tr_madVal species=\"Species_1\">10.0</tr_madVal>"
<< "</tr_minAdultDBH>"
<< "<tr_maxSeedlingHeight>"
<< "<tr_mshVal species=\"Species_1\">1.35</tr_mshVal>"
<< "</tr_maxSeedlingHeight>"
<< "</trees>"
<< "<allometry>"
<< "<tr_canopyHeight>"
<< "<tr_chVal species=\"Species_1\">40.0</tr_chVal>"
<< "</tr_canopyHeight>"
<< "<tr_stdAsympCrownRad>"
<< "<tr_sacrVal species=\"Species_1\">0.7</tr_sacrVal>"
<< "</tr_stdAsympCrownRad>"
<< "<tr_stdCrownRadExp>"
<< "<tr_screVal species=\"Species_1\">1.0</tr_screVal>"
<< "</tr_stdCrownRadExp>"
<< "<tr_stdMaxCrownRad>"
<< "<tr_smcrVal species=\"Species_1\">10</tr_smcrVal>"
<< "</tr_stdMaxCrownRad>"
<< "<tr_conversionDiam10ToDBH>"
<< "<tr_cdtdVal species=\"Species_1\">0.7</tr_cdtdVal>"
<< "</tr_conversionDiam10ToDBH>"
<< "<tr_interceptDiam10ToDBH>"
<< "<tr_idtdVal species=\"Species_1\">0</tr_idtdVal>"
<< "</tr_interceptDiam10ToDBH>"
<< "<tr_stdAsympCrownHt>"
<< "<tr_sachVal species=\"Species_1\">0.7</tr_sachVal>"
<< "</tr_stdAsympCrownHt>"
<< "<tr_stdCrownHtExp>"
<< "<tr_scheVal species=\"Species_1\">1.0</tr_scheVal>"
<< "</tr_stdCrownHtExp>"
<< "<tr_slopeOfHeight-Diam10>"
<< "<tr_sohdVal species=\"Species_1\">0.03</tr_sohdVal>"
<< "</tr_slopeOfHeight-Diam10>"
<< "<tr_slopeOfAsymHeight>"
<< "<tr_soahVal species=\"Species_1\">0.7</tr_soahVal>"
<< "</tr_slopeOfAsymHeight>"
<< "<tr_whatSeedlingHeightDiam>"
<< "<tr_wsehdVal species=\"Species_1\">0</tr_wsehdVal>"
<< "</tr_whatSeedlingHeightDiam>"
<< "<tr_whatSaplingHeightDiam>"
<< "<tr_wsahdVal species=\"Species_1\">0</tr_wsahdVal>"
<< "</tr_whatSaplingHeightDiam>"
<< "<tr_whatAdultHeightDiam>"
<< "<tr_wahdVal species=\"Species_1\">0</tr_wahdVal>"
<< "</tr_whatAdultHeightDiam>"
<< "<tr_whatAdultCrownRadDiam>"
<< "<tr_wacrdVal species=\"Species_1\">0</tr_wacrdVal>"
<< "</tr_whatAdultCrownRadDiam>"
<< "<tr_whatAdultCrownHeightHeight>"
<< "<tr_wachhVal species=\"Species_1\">0</tr_wachhVal>"
<< "</tr_whatAdultCrownHeightHeight>"
<< "<tr_whatSaplingCrownRadDiam>"
<< "<tr_wscrdVal species=\"Species_1\">0</tr_wscrdVal>"
<< "</tr_whatSaplingCrownRadDiam>"
<< "<tr_whatSaplingCrownHeightHeight>"
<< "<tr_wschhVal species=\"Species_1\">0</tr_wschhVal>"
<< "</tr_whatSaplingCrownHeightHeight>"
<< "</allometry>"
<< "<behaviorList>"
<< "<behavior>"
<< "<behaviorName>DensitySelfThinning</behaviorName>"
<< "<version>1.0</version>"
<< "<listPosition>1</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Sapling\" />"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>RemoveDead</behaviorName>"
<< "<version>2.0</version>"
<< "<listPosition>2</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seedling\" />"
<< "<applyTo species=\"Species_1\" type=\"Sapling\" />"
<< "</behavior>"
<< "</behaviorList>"
<< "<DensitySelfThinning1>"
<< "<mo_selfThinRadius>"
<< "<mo_strVal species=\"Species_1\">0.5</mo_strVal>"
<< "</mo_selfThinRadius>"
<< "<mo_minDensityForMort>"
<< "<mo_mdfmVal species=\"Species_1\">0.55</mo_mdfmVal>"
<< "</mo_minDensityForMort>"
<< "<mo_selfThinAsymptote>"
<< "<mo_staVal species=\"Species_1\">-0.55</mo_staVal>"
<< "</mo_selfThinAsymptote>"
<< "<mo_selfThinDiamEffect>"
<< "<mo_stdieVal species=\"Species_1\">0.55</mo_stdieVal>"
<< "</mo_selfThinDiamEffect>"
<< "<mo_selfThinDensityEffect>"
<< "<mo_stdeeVal species=\"Species_1\">0.55</mo_stdeeVal>"
<< "</mo_selfThinDensityEffect>"
<< "</DensitySelfThinning1>"
<< "</paramFile>";
oOut.close();
return cFileString;
}
/////////////////////////////////////////////////////////////////////////////
// WriteDensitySelfThinningXMLErrorFile6()
// Error parameter file - bad parameter
/////////////////////////////////////////////////////////////////////////////
const char* WriteDensitySelfThinningXMLErrorFile6() {
using namespace std;
const char *cFileString = "TestFile1.xml";
//Open file to write to
fstream oOut;
oOut.open(cFileString, ios::out | ios::trunc);
oOut << "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>"
<< "<paramFile fileCode=\"06010101\">"
<< "<plot>"
<< "<timesteps>2</timesteps>"
<< "<rt_timestep>0</rt_timestep>"
<< "<randomSeed>0</randomSeed>"
<< "<yearsPerTimestep>1.0</yearsPerTimestep>"
<< "<plot_lenX>100.0</plot_lenX>"
<< "<plot_lenY>100.0</plot_lenY>"
<< "<plot_precip_mm_yr>1150.645781</plot_precip_mm_yr>"
<< "<plot_temp_C>12.88171785</plot_temp_C>"
<< "<plot_latitude>0.0</plot_latitude>"
<< "</plot>"
<< "<trees>"
<< "<tr_speciesList>"
<< "<tr_species speciesName=\"Species_1\" />"
<< "</tr_speciesList>"