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snapgene format #241
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I think passing a The recommendation is to use
The second option would be to pass a callback function on the
Let us know if it works for you. |
Thanks! If it's deprecated, I'll note that genebank formatted files display quite nicely-- it seems like a Snapgene format issue.
From a quick glance at the Seqparse GitHub repository, it seems that this library is primarily designed to be used in a Node.js environment or in backend Python applications, rather than directly in the browser like I am using Seqviz.
Do you know whether Seqparse is feasible in a front-end browser implementation?
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Is it possible to share your snapgene file? Possibly `seqparse` used on the
deprecated parameter file is not correct parsing your file.
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I agree this is likely (a bug in FWIW |
Hello @mcmanuslab , is this still an issue? If so, could you share the file that was causing the issue? Thank you! |
The bug
The goal is to display a snapgene formated file in a browser. This does not appear to be working correctly. However, a genbank formatted vector of the same file works perfectly.
Expected and observed behavior
The expected behavior is to display a map and a sequence. However, the map is missing features and a title. The sequence displays, but it appears that non-DNA text also appears.
Screenshot
The local environment:
Test code below
![Screenshot 2023-11-19 at 5 38 06 PM](https://private-user-images.githubusercontent.com/51204856/284107427-38752b24-0596-4c6f-b39a-d73d87c6931b.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.1gnv0erOGbFILX4M-IzkiRG40bkM97OwUa-nsyD-mGs)
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