The evolution and mutational robustness of chromatin accessibility in Drosophila

Neural Network

For implementation of the neural network, please see the dedicated folder.

Orthology mapping

For implementation of the orthology mapping, please see the dedicated folder.

Environment

The conda environment used for this project is described in conda-env.txt.

This project was run on the Rockefeller University High Performance Computing cluster, using a variety of Nvidia K80, P100, V100, and V100S GPUs.

The Nvidia drivers were as follows:

NVIDIA-SMI 440.33.01    Driver Version: 440.33.01    CUDA Version: 10.2

The OS details were as follows:

$ lsb_release -a
LSB Version:    :core-4.1-amd64:core-4.1-ia32:core-4.1-noarch:cxx-4.1-amd64:cxx-4.1-ia32:cxx-4.1-noarch:desktop-4.1-amd64:desktop-4.1-ia32:desktop-4.1-noarch:languages-4.1-amd64:languages-4.1-noarch:printing-4.1-amd64:printing-4.1-noarch
Distributor ID: RedHatEnterpriseServer
Description:    Red Hat Enterprise Linux Server release 7.8 (Maipo)
Release:        7.8
Codename:       Maipo
$ uname -r
3.10.0-1127.el7.x86_64