-
Notifications
You must be signed in to change notification settings - Fork 24
238 lines (208 loc) · 7.78 KB
/
libE-ci.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
name: libEnsemble-CI
on: [push, pull_request]
jobs:
test-libE:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest]
python-version: [3.6, 3.7, 3.8, 3.9, '3.10']
comms-type: [m, l, t]
exclude:
- os: macos-latest
python-version: 3.6
- os: macos-latest
python-version: 3.7
env:
HYDRA_LAUNCHER: 'fork'
TERM: xterm-256color
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v2
- name: Setup conda - Python ${{ matrix.python-version }}
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: condaenv
miniconda-version: "latest"
python-version: ${{ matrix.python-version }}
channels: conda-forge
channel-priority: flexible
auto-update-conda: true
- name: Install Ubuntu compilers
if: matrix.os == 'ubuntu-latest'
run: conda install gcc_linux-64
# Roundabout solution on macos for proper linking with mpicc
- name: Install macOS compilers and older SDK
if: matrix.os == 'macos-latest'
run: |
wget https://github.com/phracker/MacOSX-SDKs/releases/download/10.15/MacOSX10.14.sdk.tar.xz
mkdir ../sdk; tar xf MacOSX10.14.sdk.tar.xz -C ../sdk
conda install clang_osx-64=9.0.1
- name: Install Octave and bc on Ubuntu
if: matrix.os == 'ubuntu-latest'
run: |
sudo apt-get update
sudo apt-get install octave
sudo apt-get install bc
- name: Install nlopt, scipy, mpich, mpi4py, blas, psutil
run: |
conda install nlopt
conda install scipy
conda install mpich
conda install mpi4py
conda install libblas libopenblas psutil
- name: Install with-batch PETSc and petsc4py
if: matrix.python-version == 3.8
env:
PETSC_CONFIGURE_OPTIONS: '--with-batch'
run: |
conda install hypre=2.22.0
conda install petsc4py
- name: Install mumps-mpi, PETSc, petsc4py
if: matrix.python-version != 3.8
run: |
conda install hypre=2.22.0
conda install mumps-mpi
conda install petsc
conda install petsc4py
- name: Install DFO-LS, mpmath, deap, other test dependencies
run: |
python -m pip install --upgrade pip
pip install DFO-LS
pip install dragonfly-opt
pip install mpmath
pip install deap
python -m pip install --upgrade git+https://github.com/mosesyhc/surmise.git@development/PCGPwM
pip install flake8
pip install coverage==4.5.4
pip install pytest
pip install pytest-cov
pip install pytest-timeout
pip install mock
pip install coveralls
- name: Install Tasmanian on Ubuntu
if: matrix.os == 'ubuntu-latest'
run: |
pip install scikit-build packaging Tasmanian --user
- name: Find MPI, Install libEnsemble, flake8, ulimit adjust
run: |
python install/find_mpi.py
mpiexec --version
pip install -e .
flake8 libensemble
ulimit -Sn 10000
- name: Run tests, Ubuntu
if: matrix.os == 'ubuntu-latest'
run: |
./libensemble/tests/run-tests.sh -e -A "-W error" -z -${{ matrix.comms-type }}
- name: Run tests, macOS
if: matrix.os == 'macos-latest'
env:
CONDA_BUILD_SYSROOT: /Users/runner/work/libensemble/sdk/MacOSX10.14.sdk
run: |
./libensemble/tests/run-tests.sh -e -A "-W error" -z -${{ matrix.comms-type }}
- name: Merge coverage, run Coveralls
env:
COVERALLS_PARALLEL: true
run: |
mv libensemble/tests/.cov* .
coveralls --service=github
test-libE-with-Balsam:
name: Test Balsam with libEnsemble
if: always()
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: [3.8]
comms-type: [l]
defaults:
run:
shell: bash -l {0}
env:
HYDRA_LAUNCHER: 'fork'
TERM: xterm-256color
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
BALSAM_DB_PATH: $HOME/test-balsam
steps:
- uses: actions/checkout@v2
- name: Setup conda - Python ${{ matrix.python-version }}
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: condaenv
miniconda-version: "latest"
python-version: ${{ matrix.python-version }}
channels: conda-forge
channel-priority: flexible
auto-update-conda: true
- name: Install Ubuntu compilers, postgresql
run: |
conda install gcc_linux-64
conda install libpq postgresql postgresql-plpython
- name: Install bc
run: |
sudo apt-get update
sudo apt-get install bc
- name: Install scipy, mpich, mpi4py, blas, psutil
run: |
conda install scipy
conda install mpich
conda install mpi4py
conda install libblas libopenblas psutil
- name: Install test dependencies
run: |
python -m pip install --upgrade pip
pip install flake8
pip install coverage==4.5.4
pip install pytest
pip install pytest-cov
pip install pytest-timeout
pip install mock
pip install coveralls
- name: Find MPI, Install libEnsemble, flake8, ulimit adjust
run: |
python install/find_mpi.py
mpiexec --version
pip install -e .
flake8 libensemble
ulimit -Sn 10000
- name: Install and configure Balsam 0.5.0
run: |
wget https://github.com/argonne-lcf/balsam/archive/refs/tags/0.5.0.tar.gz
mkdir ../balsam; tar xf 0.5.0.tar.gz -C ../balsam;
python install/configure_balsam_install.py
- name: Modify Balsam for testing, create DB
run: |
balsam init $HOME/test-balsam
sudo chmod -R 700 $HOME/test-balsam/balsamdb
source balsamactivate test-balsam
python -c 'from libensemble.tests.regression_tests.common import modify_Balsam_pyCoverage; modify_Balsam_pyCoverage()'
python -c 'from libensemble.tests.regression_tests.common import modify_Balsam_settings; modify_Balsam_settings()'
- name: Run test
run: |
source balsamactivate test-balsam
./libensemble/tests/run-tests.sh -re -y 'test_balsam*' -z -l
- name: Merge coverage, run Coveralls
env:
COVERALLS_PARALLEL: true
run: |
mv libensemble/tests/.cov* .
coveralls --service=github
coveralls:
name: Notify coveralls of all jobs completing
needs: [test-libE, test-libE-with-Balsam]
if: always()
runs-on: ubuntu-latest
container: python:3-slim
steps:
- name: Finished
run: |
pip3 install --upgrade coveralls
coveralls --finish
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}