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libE-ci.yml
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name: libEnsemble-CI
on: [push, pull_request]
jobs:
test-libE:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-16.04, macos-latest]
python-version: [3.6, 3.7, 3.8, 3.9]
comms-type: [m, l, t]
exclude:
- os: macos-latest
python-version: 3.6
- os: macos-latest
python-version: 3.7
env:
HYDRA_LAUNCHER: 'fork'
TERM: xterm-256color
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v2
- name: Setup conda - Python ${{ matrix.python-version }}
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: condaenv
miniconda-version: "latest"
python-version: ${{ matrix.python-version }}
channels: conda-forge
channel-priority: flexible
auto-update-conda: true
- name: Install Ubuntu compilers
if: matrix.os == 'ubuntu-16.04'
run: conda install gcc_linux-64
# Roundabout solution on macos for proper linking with mpicc
- name: Install macOS compilers and older SDK
if: matrix.os == 'macos-latest'
run: |
wget https://github.com/phracker/MacOSX-SDKs/releases/download/10.15/MacOSX10.14.sdk.tar.xz
mkdir ../sdk; tar xf MacOSX10.14.sdk.tar.xz -C ../sdk
conda install clang_osx-64=9.0.1
- name: Install Octave and bc on Ubuntu
if: matrix.os == 'ubuntu-16.04'
run: |
sudo apt-get update
sudo apt-get install octave
sudo apt-get install bc
- name: Install nlopt, scipy, mpich, mpi4py, blas, psutil
run: |
conda install nlopt
conda install scipy
conda install mpich
conda install mpi4py
conda install libblas libopenblas psutil
- name: Install with-batch PETSc and petsc4py
if: matrix.python-version == 3.8
env:
PETSC_CONFIGURE_OPTIONS: '--with-batch'
run: conda install petsc4py
- name: Install mumps-mpi, PETSc, petsc4py
if: matrix.python-version != 3.8
run: |
conda install mumps-mpi
conda install petsc
conda install petsc4py
- name: Install DFO-LS, mpmath, deap, other test dependencies
run: |
python -m pip install --upgrade pip
pip install DFO-LS
pip install mpmath
pip install deap
python -m pip install --upgrade git+https://github.com/mosesyhc/surmise.git@development/PCGPwM
pip install flake8
pip install coverage==4.5.4
pip install pytest
pip install pytest-cov
pip install pytest-timeout
pip install mock
pip install coveralls
- name: Install Tasmanian on Ubuntu
if: matrix.os == 'ubuntu-16.04'
run: |
pip install scikit-build packaging Tasmanian --user
- name: Find MPI, Install libEnsemble, flake8, ulimit adjust
run: |
python install/find_mpi.py
mpiexec --version
pip install -e .
flake8 libensemble
ulimit -Sn 10000
- name: Run tests, Ubuntu
if: matrix.os == 'ubuntu-16.04'
run: |
./libensemble/tests/run-tests.sh -A "-W error" -z -${{ matrix.comms-type }}
- name: Run tests, macOS
if: matrix.os == 'macos-latest'
env:
CONDA_BUILD_SYSROOT: /Users/runner/work/libensemble/sdk/MacOSX10.14.sdk
run: |
./libensemble/tests/run-tests.sh -A "-W error" -z -${{ matrix.comms-type }}
- name: Merge coverage, run Coveralls
env:
COVERALLS_PARALLEL: true
run: |
mv libensemble/tests/.cov* .
coveralls --service=github
test-libE-with-Balsam:
name: Test Balsam with libEnsemble
if: always()
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-16.04]
python-version: [3.8]
comms-type: [l]
defaults:
run:
shell: bash -l {0}
env:
HYDRA_LAUNCHER: 'fork'
TERM: xterm-256color
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
BALSAM_DB_PATH: $HOME/test-balsam
steps:
- uses: actions/checkout@v2
- name: Setup conda - Python ${{ matrix.python-version }}
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: condaenv
miniconda-version: "latest"
python-version: ${{ matrix.python-version }}
channels: conda-forge
channel-priority: flexible
auto-update-conda: true
- name: Install Ubuntu compilers, postgresql
run: |
conda install gcc_linux-64
conda install libpq postgresql postgresql-plpython
- name: Install bc
run: |
sudo apt-get update
sudo apt-get install bc
- name: Install scipy, mpich, mpi4py, blas, psutil
run: |
conda install scipy
conda install mpich
conda install mpi4py
conda install libblas libopenblas psutil
- name: Install test dependencies
run: |
python -m pip install --upgrade pip
pip install flake8
pip install coverage==4.5.4
pip install pytest
pip install pytest-cov
pip install pytest-timeout
pip install mock
pip install coveralls
- name: Find MPI, Install libEnsemble, flake8, ulimit adjust
run: |
python install/find_mpi.py
mpiexec --version
pip install -e .
flake8 libensemble
ulimit -Sn 10000
- name: Install and configure Balsam 0.5.0
run: |
wget https://github.com/argonne-lcf/balsam/archive/refs/tags/0.5.0.tar.gz
mkdir ../balsam; tar xf 0.5.0.tar.gz -C ../balsam;
python install/configure_balsam_install.py
- name: Modify Balsam for testing, create DB
run: |
balsam init $HOME/test-balsam
sudo chmod -R 700 $HOME/test-balsam/balsamdb
source balsamactivate test-balsam
python -c 'from libensemble.tests.regression_tests.common import modify_Balsam_pyCoverage; modify_Balsam_pyCoverage()'
python -c 'from libensemble.tests.regression_tests.common import modify_Balsam_settings; modify_Balsam_settings()'
- name: Run test
run: |
source balsamactivate test-balsam
./libensemble/tests/run-tests.sh -r -y 'test_balsam*' -z -l
- name: Merge coverage, run Coveralls
env:
COVERALLS_PARALLEL: true
run: |
mv libensemble/tests/.cov* .
coveralls --service=github
coveralls:
name: Notify coveralls of all jobs completing
needs: [test-libE, test-libE-with-Balsam]
if: always()
runs-on: ubuntu-16.04
container: python:3-slim
steps:
- name: Finished
run: |
pip3 install --upgrade coveralls
coveralls --finish
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}