Guide for downstream analyses

[lcolladotor]

We will write a user guide (vignette) for downstream analyses using qSVs generated with qsvaR. This guide will showcase the helper functions from #34. Potentially not all the code will be evaluated given testing restrictions on Bioconductor. Though we will explore the use of "long tests". The goal of this user guide is to help orient users into what analyses they should likely run once they have estimated qSVs. This will also help users determine whether they should use qSVs in their analyses or not, for example, if they are analyzing data from a brain region or another tissue for which no degradation data exists.