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drop deprecated reorder from AUC #5004

Merged
merged 13 commits into from Dec 9, 2020
Merged

drop deprecated reorder from AUC #5004

merged 13 commits into from Dec 9, 2020

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Borda
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@Borda Borda commented Dec 7, 2020 •
edited

What does this PR do?

drop deprecated reorder from AUC

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@Borda Borda added this to the 1.1 milestone Dec 7, 2020
@Borda Borda requested a review from rohitgr7 December 7, 2020 21:15
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rohitgr7 commented Dec 7, 2020

I didn't deprecate this #4281. Requesting @SkafteNicki for review.

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Borda commented Dec 7, 2020

I didn't deprecate this #4281. Requesting @SkafteNicki for review.

what do you mean, that we shall keep the reorder?

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rohitgr7 commented Dec 7, 2020

what do you mean, that we shall keep the reorder?

no, remove it. requesting his review for the failing test. Tests will still fail.

@Borda Borda marked this pull request as ready for review December 7, 2020 22:39
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codecov bot commented Dec 7, 2020 •
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Codecov Report

Merging #5004 (d37fca1) into master (20b806a) will increase coverage by 0%.
The diff coverage is 92%.

@@          Coverage Diff           @@
##           master   #5004   +/-   ##
======================================
  Coverage      93%     93%           
======================================
  Files         132     132           
  Lines        9832    9829    -3     
======================================
- Hits         9109    9108    -1     
+ Misses        723     721    -2

@Borda Borda added the ready PRs ready to be merged label Dec 8, 2020
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LGTM

@tchaton tchaton merged commit 90d1d9f into master Dec 9, 2020
@tchaton tchaton deleted the deprecated/auc-reorder branch December 9, 2020 18:05
gianscarpe added a commit to gianscarpe/pytorch-lightning that referenced this pull request Dec 15, 2020
@gianscarpe
Squashed commit of the following:
a4d1e48 
commit f374782c65ff01f9814457c707b214698b0f27c6
Author: gianscarpe <gianluca@scarpellini.dev>
Date:   Tue Dec 15 18:28:21 2020 +0100

    Rebasing onto master

commit 84bb9db
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Mon Dec 14 22:46:14 2020 +0100

    simplify changelog (Lightning-AI#5135)

commit 69123af
Author: Tadej Svetina <tadej.svetina@gmail.com>
Date:   Mon Dec 14 20:13:58 2020 +0100

    Fix hanging metrics tests (Lightning-AI#5134)

commit eb9cb3c
Author: Shachar Mirkin <shacharmirkin@gmail.com>
Date:   Mon Dec 14 13:39:29 2020 +0100

    Add Google Colab badges (Lightning-AI#5111)

    * Add colab badges to notebook

    Add colab badges to notebook to notebooks 4 & 5

    * Add colab badges

    Co-authored-by: chaton <thomas@grid.ai>

commit 0327f6b
Author: Carlos Mocholí <carlossmocholi@gmail.com>
Date:   Mon Dec 14 08:38:10 2020 +0100

    Do not warn when the name key is used in the lr_scheduler dict (Lightning-AI#5057)

    * Do not warn when the name key is used

    * Missing line

    * Consistency

    * Update pytorch_lightning/callbacks/lr_monitor.py

    * Update docs

    * Update pytorch_lightning/core/lightning.py

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>

    * Update CHANGELOG

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>

commit 16feb51
Author: tarepan <tarepan5884@gmail.com>
Date:   Mon Dec 14 01:13:50 2020 +0900

    Refactor load in checkpoint connector (Lightning-AI#4593)

    * Refactor load step commentaries

    * Refactor hpc ckpt suffix acquisition

    * Refactor restore/hpc_load match

    * Refactor hpc load trial

    * Refactor checkpoint dir check

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    * Fix pep8

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    * Refactor None Union type with Optional

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commit 398f122
Author: Carlos Mocholí <carlossmocholi@gmail.com>
Date:   Sun Dec 13 16:04:16 2020 +0100

    Improve some tests (Lightning-AI#5049)

    * Improve some tests

    * Add TrainerState asserts

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commit a49291d
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Sat Dec 12 17:21:19 2020 +0100

    drop unused test with result api (Lightning-AI#5058)

    Co-authored-by: chaton <thomas@grid.ai>
    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>

commit b50ad9e
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Sat Dec 12 15:55:11 2020 +0100

    split tests for deprecated api (Lightning-AI#5071)

    * imports

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commit 3100b78
Author: Rohit Gupta <rohitgr1998@gmail.com>
Date:   Sat Dec 12 15:47:03 2020 +0530

    Allow any input in to_onnx and to_torchscript (Lightning-AI#4378)

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    * pep

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commit b5a2afd
Author: Roger Shieh <sh.rog@protonmail.ch>
Date:   Sat Dec 12 15:14:17 2020 +0800

    Remove beta arg from F1 class and functional (Lightning-AI#5076)

    * remove beta from F1

    * remove from functional

    Co-authored-by: Teddy Koker <teddy.koker@gmail.com>

commit 0de43d1
Author: Roger Shieh <sh.rog@protonmail.ch>
Date:   Sat Dec 12 14:23:55 2020 +0800

    Fix docs metrics formatting (Lightning-AI#5077)

    * fix functional f1 fbeta formatting

    * Update f_beta.py

    * remove line breaks

    * Update f_beta.py

    add line breaks and pad

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commit d38e4d1
Author: skhiuk <38586033+Shumpei-Kikuta@users.noreply.github.com>
Date:   Sat Dec 12 14:00:32 2020 +0900

    fix: MNIST minor bug (Lightning-AI#5075)

    Co-authored-by: Roger Shieh <sh.rog@protonmail.ch>

commit 5f34f2b
Author: edenlightning <66261195+edenlightning@users.noreply.github.com>
Date:   Fri Dec 11 20:42:04 2020 -0500

    Update installation instructions for FairScale (Lightning-AI#5099)

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commit 63fb7f9
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Sat Dec 12 00:17:19 2020 +0100

    CI: upload report only on failer (Lightning-AI#5086)

    * CI: upload report only on failer

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    Co-authored-by: chaton <thomas@grid.ai>

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    Co-authored-by: Roger Shieh <sh.rog@protonmail.ch>
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commit 1e501f0
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Fri Dec 11 22:56:19 2020 +0100

    add back compatibility for deprecated metrics 2/n (Lightning-AI#5068)

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    * imports

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commit 4a3f906
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Fri Dec 11 22:11:21 2020 +0100

    add back compatibility for deprecated metrics 1/n (Lightning-AI#5067)

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    * add back *deprecated* metric utility functions to functional

    * pep

    * pep

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    Co-authored-by: Jirka Borovec <jirka.borovec@seznam.cz>

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    Co-authored-by: Teddy Koker <teddy.koker@gmail.com>

commit ddc3757
Author: chaton <thomas@grid.ai>
Date:   Fri Dec 11 21:21:25 2020 +0100

    Pre release (Lightning-AI#5098)

    * add rc release

    * update changelog

    * Update CHANGELOG.md

    * Update CHANGELOG.md

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>

commit 1a970b2
Author: chaton <thomas@grid.ai>
Date:   Fri Dec 11 20:24:59 2020 +0100

    [hotfix] Extend Optimizer + update doc (Lightning-AI#5095)

    * resolve urgent bug

    * update pr

    * update doc

    * update

    * remove typo

    * add defaults

    * Update pytorch_lightning/__init__.py

    * Update setup.py

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    * Update docs/source/optimizers.rst

    Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>

    * update

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    * debug test

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    * Update docs/source/optimizers.rst

    Co-authored-by: Adrian Wälchli <aedu.waelchli@gmail.com>

    * Update docs/source/optimizers.rst

    Co-authored-by: Adrian Wälchli <aedu.waelchli@gmail.com>

    * Update docs/source/optimizers.rst

    Co-authored-by: Adrian Wälchli <aedu.waelchli@gmail.com>

    * remove useless import

    * Update docs/source/optimizers.rst

    Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>
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commit 74171ef
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Fri Dec 11 18:42:53 2020 +0100

    drop duplicate metrics (Lightning-AI#5014)

    * drop duplicate metrics

    * keep

    * fix

commit 7755572
Author: chaton <thomas@grid.ai>
Date:   Fri Dec 11 14:51:45 2020 +0100

    Check if optimizer supports closure (Lightning-AI#4981)

    * check if optimizer support closure

    * cleanup test

    * resolve tests

    * resolve flake

    * update test due to patch limit

    * update

    * update dep

    * Update tests/core/test_lightning_optimizer.py

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>

    * Update tests/core/test_lightning_optimizer.py

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>

    * resolve bug

    * update test

    * resolve tests

    * Update requirements/extra.txt

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    * remove bolts dep

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    * add missing bolts dep for tests

    * remove need for bolts

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>
    Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>

commit 4e6a871
Author: Rohit Gupta <rohitgr1998@gmail.com>
Date:   Fri Dec 11 15:07:32 2020 +0530

    Added CHANGELOG section (Lightning-AI#5065)

commit 7e8673d
Author: Alan Du <alanhdu@gmail.com>
Date:   Thu Dec 10 12:26:02 2020 -0500

    Update DDP docs (Lightning-AI#5046)

    * Fix flake8 error to fix CI

    * Correct weights-loading to use correct callbacks

    * Fix dangling links

    Co-authored-by: chaton <thomas@grid.ai>
    Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>

commit 2c3d43d
Author: chaton <thomas@grid.ai>
Date:   Thu Dec 10 15:24:44 2020 +0100

    Initialize trainer with None in DDPAccelerator (Lightning-AI#4915)

    * Initialize trainer with None

    * add typing to all accelerators

    * resolve imports

    * update

    * add typing

    * removed typo

    * update

    * Fix formatting and imports in accelerator

    Co-authored-by: maxjeblick <maxjeblick@users.noreply.github.com>
    Co-authored-by: Sean Naren <sean.narenthiran@gmail.com>
    Co-authored-by: SeanNaren <sean@grid.ai>
    Co-authored-by: Roger Shieh <sh.rog@protonmail.ch>

commit d5fa02e
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Thu Dec 10 14:06:13 2020 +0100

    simplify accelerator steps (Lightning-AI#5015)

    * simplify accelerator steps

    * Apply suggestions from code review

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>

commit 820d5c7
Author: Hemil Desai <hemil.desai10@gmail.com>
Date:   Thu Dec 10 16:26:18 2020 +0530

    Add a notebook example to reach a quick baseline of ~94% accuracy on CIFAR (Lightning-AI#4818)

    * Add a notebook example to reach a quick baseline of ~94% accuracy on CIFAR10 using Resnet in Lightning

    * Remove outputs

    * PR Feedback

    * some changes

    * some more changes

    Co-authored-by: chaton <thomas@grid.ai>
    Co-authored-by: rohitgr7 <rohitgr1998@gmail.com>

commit 4ebce38
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Thu Dec 10 11:01:33 2020 +0100

    update usage of deprecated automatic_optimization (Lightning-AI#5011)

    * drop deprecated usage automatic_optimization

    * Apply suggestions from code review

    Co-authored-by: Adrian Wälchli <aedu.waelchli@gmail.com>

    * Apply suggestions from code review

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    Co-authored-by: Adrian Wälchli <aedu.waelchli@gmail.com>
    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>

commit 77fb425
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Thu Dec 10 08:38:14 2020 +0100

    update usage of deprecated profiler (Lightning-AI#5010)

    * drop deprecated profiler

    * lut

    Co-authored-by: Roger Shieh <sh.rog@protonmail.ch>

commit cdbddbe
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Thu Dec 10 01:52:39 2020 +0100

    release 1.1.0 (Lightning-AI#5048)

    * release 1.1.0

    * pep8

commit 05f25f3
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Wed Dec 9 20:14:34 2020 +0100

    update usage of deprecated checkpoint_callback (Lightning-AI#5006)

    * drop usage of deprecated checkpoint_callback

    * fix

    * fix

commit ce91795
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Wed Dec 9 20:13:57 2020 +0100

    ref: clean config [1/n] add intermediate setters (Lightning-AI#4990)

    * add intermediate setters

    * show inputs

    * fix options

    * move

    * fix

    * less talk

    * fix

    * talk less

    * str

    * cases

    * rename

    Co-authored-by: chaton <thomas@grid.ai>

commit 068502f
Author: Francisco J. H. Heras <fjhheras@gmail.com>
Date:   Wed Dec 9 19:13:13 2020 +0000

    Loss format from .3f to .3g in the tqdm (Lightning-AI#4972)

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commit bcbba3b
Author: Rohit Gupta <rohitgr1998@gmail.com>
Date:   Thu Dec 10 00:42:44 2020 +0530

    Simplify GPU and TPU accelerator (Lightning-AI#5024)

commit 90d1d9f
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Wed Dec 9 19:05:12 2020 +0100

    drop deprecated reorder from AUC (Lightning-AI#5004)

    * drop deprecated reorder from AUC

    * chlog

    * fix

    * fix

    * simple

    * fix

    * fix

    * fix

    Co-authored-by: Roger Shieh <sh.rog@protonmail.ch>

commit 20b806a
Author: chaton <thomas@grid.ai>
Date:   Wed Dec 9 16:31:18 2020 +0000

    [feat] 3/n pp (Lightning-AI#5036)

    * add pp doc

    * udpate doc

    * update doc

    * update doc

    * Update docs

    * update doc

    * udpate

    * update doc

    * update doc

    * Formatting, update sharded zip link

    * Update docs/source/multi_gpu.rst

    Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com>

    * Apply suggestions from code review

    * Reference directly to section

    Co-authored-by: SeanNaren <sean@grid.ai>
    Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com>
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commit 69725ad
Author: Carlos Mocholí <carlossmocholi@gmail.com>
Date:   Wed Dec 9 16:48:46 2020 +0100

    Add carmocca to core (Lightning-AI#5038)

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    Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>

commit cff2489
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Wed Dec 9 15:53:49 2020 +0100

    fix GH release badges (Lightning-AI#5040)

    * fix GH release badges

    * rtd

commit ef8ef12
Author: chaton <thomas@grid.ai>
Date:   Wed Dec 9 12:56:51 2020 +0000

    [feat] pp 2/n (Lightning-AI#5026)

    * Added changes for RPC plugin

    * Add missing kwargs

    * Fix code format

    * Loading refactors by introducing is_distributed var, fix optimizer step flow

    * Add rpc guard

    * Added docstrings and typing

    * resolve comments

    * Add additional rpc hook, refactor name of exit process hook for clarity

    * remove annotation

    * Modify behaviour to allow optional return, add test for rpc plugin

    * resolve tests

    * rename is_ddp_based

    * update

    * update for windows

    * update

    * resolve test

    * code smell

    * Added sequential plugin

    * resolve bug

    * update

    * cleanup

    * add Exception

    * resolve docs

    * Remove ddp support

    * Revert distributed -> ddp

    * Update pl_examples/basic_examples/conv_sequential_example.py

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    * Update pl_examples/basic_examples/conv_sequential_example.py

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    * Update pytorch_lightning/plugins/ddp_sequential_plugin.py

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    * Address code review points

    * Update pytorch_lightning/plugins/ddp_sequential_plugin.py

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    * Update pytorch_lightning/plugins/ddp_sequential_plugin.py

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    * Add missing return

    * Fix formatting, add datamodule args

    * add small comment

    * resolve comments

    * resolve comments

    * update source for fairscale

    * update extras

    * remove staticmethod

    * resolve flake8

    * Skip tests that are failing due to bug upstream with multiple optimizers and shard

    * update

    * update on comments

    * clean test

    * latest comments

    * remove old comments

    * add todo

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    * resolve on comments

    * Update pytorch_lightning/plugins/ddp_sequential_plugin.py

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    * resolve on comments

    * Update pytorch_lightning/plugins/ddp_sequential_plugin.py

    Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com>

    * Update pytorch_lightning/plugins/ddp_sequential_plugin.py

    Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com>

    * Update pytorch_lightning/plugins/ddp_sequential_plugin.py

    Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com>

    * Update pytorch_lightning/plugins/ddp_sequential_plugin.py

    Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com>

    * remove ImportError

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commit 7d9784e
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Wed Dec 9 12:53:37 2020 +0100

    adding missing changelogs (Lightning-AI#5019)

    * adding missing changelogs

    * Apply suggestions from code review

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>

    * Apply suggestions from code review

    Co-authored-by: Adrian Wälchli <aedu.waelchli@gmail.com>

    Co-authored-by: Rohit Gupta <rohitgr1998@gmail.com>
    Co-authored-by: Adrian Wälchli <aedu.waelchli@gmail.com>

commit 6a99d95
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Wed Dec 9 11:53:22 2020 +0100

    fix ci: release (Lightning-AI#5037)

commit e2c404b
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Wed Dec 9 10:59:44 2020 +0100

    CI: update badges for release (Lightning-AI#5002)

    * fix images

    * not sleep

    * a0

    * path

    * assets

    * assets

    * bitecode

    * rls

    * rls

    * badges

    * fix

    * org

    * drop

    * clean

    * codecov

    * fix

    * clean

commit 53d7c95
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Wed Dec 9 09:18:23 2020 +0100

    drop usage of deprecated distributed_backend (Lightning-AI#5009)

    Co-authored-by: chaton <thomas@grid.ai>
    Co-authored-by: Roger Shieh <sh.rog@protonmail.ch>

commit 2c11d96
Author: Jirka Borovec <Borda@users.noreply.github.com>
Date:   Wed Dec 9 03:57:11 2020 +0100

    replace pyright by mypy (Lightning-AI#5021)

    * drop pyright & add mypy

    * detail

    * name

    * fix

    * flake8

    * ver

    Co-authored-by: Sean Naren <sean.narenthiran@gmail.com>

commit 127454a
Author: Ananya Harsh Jha <ananya@pytorchlightning.ai>
Date:   Tue Dec 8 18:20:01 2020 -0500

    All gatherwith grads (Lightning-AI#5012)

    * all_gather

    * ddp

    * horovod

    * grad tests

    * fixed ddp

    * ddp fixed, removed tpu, horovod for now

    * changelog

    * windows fix

    * windows fix

    * removed batch from ctx

    * all_gather

    * ddp

    * horovod

    * grad tests

    * fixed ddp

    * ddp fixed, removed tpu, horovod for now

    * changelog

    * windows fix

    * windows fix

    * removed batch from ctx

    * removed code duplication

    * merge

    Co-authored-by: Jirka Borovec <Borda@users.noreply.github.com>

commit ee9b3fe
Author: Sean Naren <sean.narenthiran@gmail.com>
Date:   Tue Dec 8 22:02:10 2020 +0000

    [feat] pp 1/n (Lightning-AI#5016)

    * Added changes for RPC plugin

    * Add missing kwargs

    * Fix code format

    * Loading refactors by introducing is_distributed var, fix optimizer step flow

    * Add rpc guard

    * Added docstrings and typing

    * resolve comments

    * Add additional rpc hook, refactor name of exit process hook for clarity

    * remove annotation

    * Modify behaviour to allow optional return, add test for rpc plugin

    * resolve tests

    * rename is_ddp_based

    * update

    * update for windows

    * update

    * resolve test

    * code smell

    * Revert back to init_ddp_connection for backwards compat

    * Swap to explicit name for property

    * Add missing speed parity increase for CI variability, fix call counts for child process

    Co-authored-by: tchaton <thomas@grid.ai>

commit ddd3eda
Author: brett koonce <koonce@gmail.com>
Date:   Tue Dec 8 15:27:43 2020 -0600

    docs: minor spelling tweaks (Lightning-AI#5022)

commit 6d2aeff
Author: Rohit Gupta <rohitgr1998@gmail.com>
Date:   Wed Dec 9 01:37:53 2020 +0530

    fast_dev_run can be int (Lightning-AI#4629)

    * fast_dev_run can be int

    * pep

    * chlog

    * add check and update docs

    * logging with fdr

    * update docs

    * suggestions

    Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com>

    * fdr flush logs

    * update trainer.fast_dev_run

    * codefactor and pre-commit isort

    * tmp

    Co-authored-by: Carlos Mocholí <carlossmocholi@gmail.com>
    Co-authored-by: Roger Shieh <sh.rog@protonmail.ch>
    Co-authored-by: edenlightning <66261195+edenlightning@users.noreply.github.com>

commit 79ae66d
Author: maxjeblick <maxjeblick@users.noreply.github.com>
Date:   Tue Dec 8 18:19:55 2020 +0100

    Initialize trainer with None (Lightning-AI#4847)

    Co-authored-by: Sean Naren <sean.narenthiran@gmail.com>
    Co-authored-by: chaton <thomas@grid.ai>
    Co-authored-by: edenlightning <66261195+edenlightning@users.noreply.github.com>
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@williamFalcon williamFalcon williamFalcon approved these changes

@teddykoker teddykoker teddykoker approved these changes

@justusschock justusschock justusschock approved these changes

@SkafteNicki SkafteNicki SkafteNicki approved these changes

@rohitgr7 rohitgr7 Awaiting requested review from rohitgr7

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@awaelchli awaelchli Awaiting requested review from awaelchli awaelchli is a code owner

@SeanNaren SeanNaren Awaiting requested review from SeanNaren

@tchaton tchaton Awaiting requested review from tchaton tchaton is a code owner

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