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normalized_mutual_info_score.py
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normalized_mutual_info_score.py
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# Copyright The Lightning team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Any, List, Literal, Optional, Sequence, Union
from torch import Tensor
from torchmetrics.clustering.mutual_info_score import MutualInfoScore
from torchmetrics.functional.clustering.normalized_mutual_info_score import (
_validate_average_method_arg,
normalized_mutual_info_score,
)
from torchmetrics.utilities.data import dim_zero_cat
from torchmetrics.utilities.imports import _MATPLOTLIB_AVAILABLE
from torchmetrics.utilities.plot import _AX_TYPE, _PLOT_OUT_TYPE
if not _MATPLOTLIB_AVAILABLE:
__doctest_skip__ = ["NormalizedMutualInfoScore.plot"]
class NormalizedMutualInfoScore(MutualInfoScore):
r"""Compute `Normalized Mutual Information Score`_.
.. math::
NMI(U,V) = \frac{MI(U,V)}{M_p(U,V)}
Where :math:`U` is a tensor of target values, :math:`V` is a tensor of predictions, :math:`M_p(U,V)` is the
generalized mean of order :math:`p` of :math:`U` and :math:`V`, and :math:`MI(U,V)` is the mutual information score
between clusters :math:`U` and :math:`V`. The metric is symmetric, therefore swapping :math:`U` and :math:`V` yields
the same mutual information score.
This clustering metric is an extrinsic measure, because it requires ground truth clustering labels, which may not
be available in practice since clustering in generally is used for unsupervised learning.
As input to ``forward`` and ``update`` the metric accepts the following input:
- ``preds`` (:class:`~torch.Tensor`): single integer tensor with shape ``(N,)`` with predicted cluster labels
- ``target`` (:class:`~torch.Tensor`): single integer tensor with shape ``(N,)`` with ground truth cluster labels
As output of ``forward`` and ``compute`` the metric returns the following output:
- ``nmi_score`` (:class:`~torch.Tensor`): A tensor with the Normalized Mutual Information Score
Args:
average_method: Method used to calculate generalized mean for normalization
kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
Example::
>>> import torch
>>> from torchmetrics.clustering import NormalizedMutualInfoScore
>>> preds = torch.tensor([2, 1, 0, 1, 0])
>>> target = torch.tensor([0, 2, 1, 1, 0])
>>> nmi_score = NormalizedMutualInfoScore("arithmetic")
>>> nmi_score(preds, target)
tensor(0.4744)
"""
is_differentiable: bool = True
higher_is_better: Optional[bool] = None
full_state_update: bool = False
plot_lower_bound: float = 0.0
plot_upper_bound: float = 0.0
preds: List[Tensor]
target: List[Tensor]
contingency: Tensor
def __init__(
self, average_method: Literal["min", "geometric", "arithmetic", "max"] = "arithmetic", **kwargs: Any
) -> None:
super().__init__(**kwargs)
_validate_average_method_arg(average_method)
self.average_method = average_method
def compute(self) -> Tensor:
"""Compute normalized mutual information over state."""
return normalized_mutual_info_score(dim_zero_cat(self.preds), dim_zero_cat(self.target), self.average_method)
def plot(self, val: Union[Tensor, Sequence[Tensor], None] = None, ax: Optional[_AX_TYPE] = None) -> _PLOT_OUT_TYPE:
"""Plot a single or multiple values from the metric.
Args:
val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
If no value is provided, will automatically call `metric.compute` and plot that result.
ax: An matplotlib axis object. If provided will add plot to that axis
Returns:
Figure and Axes object
Raises:
ModuleNotFoundError:
If `matplotlib` is not installed
.. plot::
:scale: 75
>>> # Example plotting a single value
>>> import torch
>>> from torchmetrics.clustering import NormalizedMutualInfoScore
>>> metric = NormalizedMutualInfoScore()
>>> metric.update(torch.randint(0, 4, (10,)), torch.randint(0, 4, (10,)))
>>> fig_, ax_ = metric.plot(metric.compute())
.. plot::
:scale: 75
>>> # Example plotting multiple values
>>> import torch
>>> from torchmetrics.clustering import NormalizedMutualInfoScore
>>> metric = NormalizedMutualInfoScore()
>>> values = [ ]
>>> for _ in range(10):
... values.append(metric(torch.randint(0, 4, (10,)), torch.randint(0, 4, (10,))))
>>> fig_, ax_ = metric.plot(values)
"""
return self._plot(val, ax)