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DESCRIPTION
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DESCRIPTION
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Package: SeqArray
Type: Package
Title: Big Data Management of Whole-genome Sequence Variant Calls
Version: 1.19.1
Date: 2017-11-07
Depends: R (>= 3.3.0), gdsfmt (>= 1.10.1)
Imports: methods, parallel, IRanges, GenomicRanges, GenomeInfoDb, Biostrings,
S4Vectors
LinkingTo: gdsfmt
Suggests: digest, crayon, RUnit, knitr, Rcpp, SNPRelate, Biobase, BiocParallel,
BiocGenerics, VariantAnnotation
Authors@R: c(person("Xiuwen", "Zheng", role=c("aut", "cre"),
email="zhengx@u.washington.edu"),
person("Stephanie", "Gogarten", role="aut",
email="sdmorris@u.washington.edu"),
person("David", "Levine", role="ctb"),
person("Cathy", "Laurie", role="ctb"))
Description: Big data management of whole-genome sequencing variant calls with
thousands of individuals: genotypic data (e.g., SNVs, indels and
structural variation calls) and annotations in SeqArray files are
stored in an array-oriented and compressed manner, with efficient data
access using the R programming language.
License: GPL-3
VignetteBuilder: knitr
ByteCompile: TRUE
URL: http://github.com/zhengxwen/SeqArray
BugReports: http://github.com/zhengxwen/SeqArray/issues
biocViews: Infrastructure, DataRepresentation, Sequencing, Genetics