tutorials.rst

Tutorials

Goal

This set of tutorials will teach lugerlab members how to process, analyze, and present structural data.

Coding

.. toctree::
   :maxdepth: 1

   tutorials/computing
   tutorials/computers
   tutorials/adv_py_cod
   tutorials/adv_py_graphing
   tutorials/github

Structural analysis

.. toctree::
   :maxdepth: 1

   tutorials/chimera
   tutorials/chimerax
   tutorials/vmd

EM/crystallography data processing

.. toctree::
   :maxdepth: 1

   tutorials/cryosparc
   tutorials/relion
   tutorials/ccp4
   tutorials/phenix

Molecular dynamics simulations

MD simulations use physical parameters of atoms to simulate how they interact. There are various approaches, softwares, and forcefields to use for simulations. Choosing the correct set will allow you to gain mechanistic insight into your biomolecular system.

.. toctree::
   :maxdepth: 1

   tutorials/md_sims
   tutorials/amber
   tutorials/gromacs
   tutorials/namd

Opentrons robot

.. toctree::
   :maxdepth: 1

   tutorials/robotics
   tutorials/robot_scripts

Other

.. toctree::
   :maxdepth: 1

   tutorials/structure_viewer
   tutorials/ultrascan
   tutorials/figures
   tutorials/talks
   tutorials/documentation.rst