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Core modules

The MDAnalysis.core modules contain functionality essential for MDAnalysis, such as the central data structures in MDAnalysis.core.universe and MDAnalysis.core.groups or the selection definitions and parsing in MDAnalysis.core.selection.

core/init

Important objects for users

All users of MDAnalysis need to understand the two most important classes in this section, namely the ~MDAnalysis.core.universe.Universe and the ~MDAnalysis.core.groups.AtomGroup.

core/universe core/groups

Topology system

The topology system is primarily of interest to developers.

core/topology core/topologyobjects core/topologyattrs

Developer notes for Topology Parsers <topology-parsers-developer-notes>

Selection system

The selection system is primarily of interest to developers.

core/selection