TractSeg stopping midway with no error

[aqadi05]

Tried running TractSeg using Docker, but the process stops abruptly without returning an error. I've pasted the command and output from the terminal below:

---

sudo docker run --platform linux/amd64/v8 -v /Desktop/decal:/data
-t wasserth/tractseg_container:master TractSeg -i /data/dwi.nii.gz --raw_diffusion_input

Password:

/usr/local/lib/python3.7/site-packages/pandas/compat/init.py:124: UserWarning: Could not import the lzma module. Your installed Python is incomplete. Attempting to use lzma compression will result in a RuntimeError.
warnings.warn(msg)
Creating brain mask...
Creating peaks (1 of 3)...
Creating peaks (2 of 3)...
Creating peaks (3 of 3)...
Reorienting data...
Loading weights from: /root/.tractseg/pretrained_weights_tract_segmentation_v3.npz
Processing direction (1 of 3)
100%|███████████████████████████████████████████████████████████████████████████████████████████████| 144/144 [02:39<00:00, 1.11s/it]
Processing direction (2 of 3)
(base) Desktop %

Any feedback on what might be going on would be appreciated. Thanks!

[giovannividetta]

Hi, @aqadi05

I have the same problem and I started discussing with Wasserthal here: #269

In my case the process is killed because of out of memory (OOM) error. Actually, I am running the script on Ubuntu subsystem installed on Windows. I will run TractSeg on a pc with Linux to see if the OOM error persists.

If you want, I let you know as soon as possible!