ODAMNet is a set of three different approaches to study the molecular relationship between chemicals and rare diseases. These three approaches are Overlap analysis, diffusion analysis using random walk with restart and active module identification.
This project was created within the framework of the EJRP-RD project.
If you use ODAMNet, please cite our publication:
Térézol M, Baudot A, Ozisik O. ODAMNet: A Python package to identify molecular relationships between chemicals and rare diseases using overlap, active module and random walk approaches. SoftwareX. 2024;26:101701. doi: 10.1016/j.softx.2024.101701.
.. toctree:: :caption: Quickstart :titlesonly: pages/Installation
.. toctree:: :maxdepth: 2 :caption: Approaches pages/approaches/methods_overview pages/approaches/methods_overlap pages/approaches/methods_AMI pages/approaches/methods_RWR
.. toctree:: :maxdepth: 2 :caption: Networks pages/network/NetworkDownloading pages/network/NetworkCreation pages/network/NetworkVisualisation pages/network/NetworkUsed
.. toctree:: :maxdepth: 2 :caption: Use-cases pages/analysis/usecase1 pages/analysis/usecase2
.. toctree:: :maxdepth: 2 :caption: File formats pages/formats/Input pages/formats/Output
.. toctree:: :maxdepth: 1 :caption: Code description pages/functions/fcts_arguments pages/functions/fcts_description