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Load GFF file to pandas

Reading GFF file into pandas dataframe and filtering based on features/attributes.

  • Reades a compressed (gzipped) GFF files into a pandas dataframe.
  • Converts feature string into a dictionary to allow filtering based on the dictionary entries.

This example uses Arabidopsis11 GFF file from TAIR (https://www.arabidopsis.org/download/).

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Reading GFF file into pandas dataframe and filtering based on features/attributes

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